Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS01470 and ABZR88_RS01475 are separated by 140 nucleotides ABZR88_RS01475 and ABZR88_RS01480 overlap by 1 nucleotides ABZR88_RS01480 and ABZR88_RS01485 are separated by 222 nucleotides
ABZR88_RS01470: ABZR88_RS01470 - T9SS type A sorting domain-containing protein, at 336,911 to 337,744
_RS01470
ABZR88_RS01475: ABZR88_RS01475 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 337,885 to 338,367
_RS01475
ABZR88_RS01480: ABZR88_RS01480 - type IX secretion system outer membrane channel protein PorV, at 338,367 to 339,560
_RS01480
ABZR88_RS01485: ABZR88_RS01485 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 339,783 to 341,438
_RS01485
Position (kb) 338
339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 337.383 kb on + strand, within ABZR88_RS01470 at 337.427 kb on - strand, within ABZR88_RS01470 at 337.478 kb on - strand, within ABZR88_RS01470 at 337.526 kb on - strand, within ABZR88_RS01470 at 337.712 kb on - strand at 337.838 kb on + strand at 338.456 kb on - strand at 338.474 kb on - strand at 338.576 kb on - strand, within ABZR88_RS01480 at 338.581 kb on + strand, within ABZR88_RS01480 at 338.581 kb on + strand, within ABZR88_RS01480 at 338.733 kb on - strand, within ABZR88_RS01480 at 338.952 kb on + strand, within ABZR88_RS01480 at 339.217 kb on + strand, within ABZR88_RS01480 at 339.218 kb on - strand, within ABZR88_RS01480 at 339.272 kb on - strand, within ABZR88_RS01480 at 339.342 kb on + strand, within ABZR88_RS01480 at 339.459 kb on - strand at 339.528 kb on - strand at 339.528 kb on - strand at 339.528 kb on - strand at 339.720 kb on + strand at 339.720 kb on + strand at 339.798 kb on - strand at 339.888 kb on - strand at 339.915 kb on + strand at 339.955 kb on + strand, within ABZR88_RS01485 at 340.006 kb on + strand, within ABZR88_RS01485 at 340.023 kb on - strand, within ABZR88_RS01485 at 340.203 kb on + strand, within ABZR88_RS01485 at 340.317 kb on - strand, within ABZR88_RS01485 at 340.457 kb on - strand, within ABZR88_RS01485 at 340.457 kb on - strand, within ABZR88_RS01485 at 340.467 kb on - strand, within ABZR88_RS01485
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 337,383 + ABZR88_RS01470 0.57 +2.6 337,427 - ABZR88_RS01470 0.62 -0.8 337,478 - ABZR88_RS01470 0.68 +0.4 337,526 - ABZR88_RS01470 0.74 -0.1 337,712 - +0.5 337,838 + +0.2 338,456 - -1.6 338,474 - -1.7 338,576 - ABZR88_RS01480 0.18 -1.8 338,581 + ABZR88_RS01480 0.18 -0.3 338,581 + ABZR88_RS01480 0.18 -1.6 338,733 - ABZR88_RS01480 0.31 -0.5 338,952 + ABZR88_RS01480 0.49 -1.5 339,217 + ABZR88_RS01480 0.71 -1.5 339,218 - ABZR88_RS01480 0.71 -2.8 339,272 - ABZR88_RS01480 0.76 -3.2 339,342 + ABZR88_RS01480 0.82 -2.9 339,459 - -1.5 339,528 - -0.2 339,528 - -1.0 339,528 - -0.5 339,720 + -0.2 339,720 + +0.2 339,798 - +0.1 339,888 - +0.6 339,915 + -0.3 339,955 + ABZR88_RS01485 0.10 +0.6 340,006 + ABZR88_RS01485 0.13 +0.9 340,023 - ABZR88_RS01485 0.14 +0.5 340,203 + ABZR88_RS01485 0.25 -0.3 340,317 - ABZR88_RS01485 0.32 -0.2 340,457 - ABZR88_RS01485 0.41 +1.5 340,457 - ABZR88_RS01485 0.41 +1.5 340,467 - ABZR88_RS01485 0.41 +0.7
Or see this region's nucleotide sequence