Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS01455 and ABZR88_RS01460 are separated by 92 nucleotides ABZR88_RS01460 and ABZR88_RS01465 are separated by 5 nucleotides ABZR88_RS01465 and ABZR88_RS01470 are separated by 144 nucleotides
ABZR88_RS01455: ABZR88_RS01455 - VOC family protein, at 333,826 to 334,176
_RS01455
ABZR88_RS01460: ABZR88_RS01460 - response regulator transcription factor, at 334,269 to 334,964
_RS01460
ABZR88_RS01465: ABZR88_RS01465 - sensor histidine kinase KdpD, at 334,970 to 336,766
_RS01465
ABZR88_RS01470: ABZR88_RS01470 - T9SS type A sorting domain-containing protein, at 336,911 to 337,744
_RS01470
Position (kb) 334
335
336
337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 334.040 kb on + strand, within ABZR88_RS01455 at 334.202 kb on + strand at 334.202 kb on + strand at 334.217 kb on + strand at 334.253 kb on - strand at 334.286 kb on + strand at 334.295 kb on + strand at 334.666 kb on + strand, within ABZR88_RS01460 at 334.948 kb on - strand at 335.179 kb on + strand, within ABZR88_RS01465 at 335.361 kb on + strand, within ABZR88_RS01465 at 335.383 kb on + strand, within ABZR88_RS01465 at 335.485 kb on + strand, within ABZR88_RS01465 at 335.514 kb on + strand, within ABZR88_RS01465 at 335.767 kb on + strand, within ABZR88_RS01465 at 335.842 kb on + strand, within ABZR88_RS01465 at 335.933 kb on + strand, within ABZR88_RS01465 at 335.933 kb on + strand, within ABZR88_RS01465 at 336.343 kb on - strand, within ABZR88_RS01465 at 336.494 kb on - strand, within ABZR88_RS01465 at 336.615 kb on - strand at 336.637 kb on - strand at 336.743 kb on + strand at 336.876 kb on - strand at 337.009 kb on + strand, within ABZR88_RS01470 at 337.013 kb on + strand, within ABZR88_RS01470 at 337.210 kb on + strand, within ABZR88_RS01470 at 337.229 kb on - strand, within ABZR88_RS01470 at 337.383 kb on + strand, within ABZR88_RS01470 at 337.427 kb on - strand, within ABZR88_RS01470 at 337.478 kb on - strand, within ABZR88_RS01470 at 337.526 kb on - strand, within ABZR88_RS01470 at 337.712 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 334,040 + ABZR88_RS01455 0.61 -0.5 334,202 + +0.4 334,202 + +0.4 334,217 + +0.6 334,253 - +1.8 334,286 + -2.2 334,295 + +1.3 334,666 + ABZR88_RS01460 0.57 -2.9 334,948 - -1.7 335,179 + ABZR88_RS01465 0.12 -1.6 335,361 + ABZR88_RS01465 0.22 -1.5 335,383 + ABZR88_RS01465 0.23 -1.3 335,485 + ABZR88_RS01465 0.29 -0.4 335,514 + ABZR88_RS01465 0.30 -1.1 335,767 + ABZR88_RS01465 0.44 -1.5 335,842 + ABZR88_RS01465 0.49 -3.1 335,933 + ABZR88_RS01465 0.54 -0.8 335,933 + ABZR88_RS01465 0.54 -1.0 336,343 - ABZR88_RS01465 0.76 -2.3 336,494 - ABZR88_RS01465 0.85 -1.1 336,615 - +0.1 336,637 - -0.7 336,743 + +0.7 336,876 - -0.9 337,009 + ABZR88_RS01470 0.12 -0.4 337,013 + ABZR88_RS01470 0.12 +0.3 337,210 + ABZR88_RS01470 0.36 -0.2 337,229 - ABZR88_RS01470 0.38 -0.5 337,383 + ABZR88_RS01470 0.57 +2.6 337,427 - ABZR88_RS01470 0.62 -0.8 337,478 - ABZR88_RS01470 0.68 +0.4 337,526 - ABZR88_RS01470 0.74 -0.1 337,712 - +0.5
Or see this region's nucleotide sequence