Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS00905 and ABZR88_RS00910 are separated by 143 nucleotides ABZR88_RS00910 and ABZR88_RS00915 are separated by 172 nucleotides ABZR88_RS00915 and ABZR88_RS00920 are separated by 123 nucleotides
ABZR88_RS00905: ABZR88_RS00905 - TerC/Alx family metal homeostasis membrane protein, at 184,534 to 185,586
_RS00905
ABZR88_RS00910: ABZR88_RS00910 - diadenylate cyclase CdaA, at 185,730 to 186,521
_RS00910
ABZR88_RS00915: ABZR88_RS00915 - HAD family phosphatase, at 186,694 to 187,311
_RS00915
ABZR88_RS00920: ABZR88_RS00920 - EVE domain-containing protein, at 187,435 to 187,839
_RS00920
Position (kb) 185
186
187 Strain fitness (log2 ratio) -1
0
1 at 185.670 kb on + strand at 185.690 kb on + strand at 185.866 kb on - strand, within ABZR88_RS00910 at 185.872 kb on + strand, within ABZR88_RS00910 at 185.873 kb on - strand, within ABZR88_RS00910 at 186.108 kb on - strand, within ABZR88_RS00910 at 186.157 kb on + strand, within ABZR88_RS00910 at 186.236 kb on - strand, within ABZR88_RS00910 at 186.317 kb on + strand, within ABZR88_RS00910 at 186.318 kb on - strand, within ABZR88_RS00910 at 186.318 kb on - strand, within ABZR88_RS00910 at 186.520 kb on - strand at 186.580 kb on + strand at 186.695 kb on + strand at 186.986 kb on + strand, within ABZR88_RS00915 at 186.989 kb on - strand, within ABZR88_RS00915 at 187.422 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 185,670 + -0.1 185,690 + +1.6 185,866 - ABZR88_RS00910 0.17 -1.0 185,872 + ABZR88_RS00910 0.18 +0.3 185,873 - ABZR88_RS00910 0.18 -0.7 186,108 - ABZR88_RS00910 0.48 -1.0 186,157 + ABZR88_RS00910 0.54 -0.5 186,236 - ABZR88_RS00910 0.64 +0.3 186,317 + ABZR88_RS00910 0.74 -1.5 186,318 - ABZR88_RS00910 0.74 -0.7 186,318 - ABZR88_RS00910 0.74 -1.3 186,520 - -0.7 186,580 + +0.6 186,695 + -0.3 186,986 + ABZR88_RS00915 0.47 +0.8 186,989 - ABZR88_RS00915 0.48 -0.7 187,422 - -1.3
Or see this region's nucleotide sequence