Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS00790 and ABZR88_RS00795 are separated by 183 nucleotides ABZR88_RS00795 and ABZR88_RS00800 are separated by 124 nucleotides ABZR88_RS00800 and ABZR88_RS00805 overlap by 4 nucleotides
ABZR88_RS00790: ABZR88_RS00790 - beta-xylosidase, at 151,385 to 153,112
_RS00790
ABZR88_RS00795: ABZR88_RS00795 - Lrp/AsnC family transcriptional regulator, at 153,296 to 153,766
_RS00795
ABZR88_RS00800: ABZR88_RS00800 - metal-dependent transcriptional regulator, at 153,891 to 154,541
_RS00800
ABZR88_RS00805: ABZR88_RS00805 - Nramp family divalent metal transporter, at 154,538 to 156,421
_RS00805
Position (kb) 153
154
155 Strain fitness (log2 ratio) -1
0
1 at 152.904 kb on + strand, within ABZR88_RS00790 at 152.905 kb on - strand, within ABZR88_RS00790 at 152.905 kb on - strand, within ABZR88_RS00790 at 153.162 kb on - strand at 153.193 kb on + strand at 153.257 kb on - strand at 153.267 kb on - strand at 153.277 kb on - strand at 153.340 kb on + strand at 153.409 kb on - strand, within ABZR88_RS00795 at 153.606 kb on + strand, within ABZR88_RS00795 at 153.606 kb on + strand, within ABZR88_RS00795 at 153.606 kb on + strand, within ABZR88_RS00795 at 153.614 kb on - strand, within ABZR88_RS00795 at 153.777 kb on - strand at 153.783 kb on - strand at 153.928 kb on + strand at 153.986 kb on + strand, within ABZR88_RS00800 at 154.052 kb on + strand, within ABZR88_RS00800 at 154.060 kb on - strand, within ABZR88_RS00800 at 154.203 kb on - strand, within ABZR88_RS00800 at 154.214 kb on - strand, within ABZR88_RS00800 at 154.241 kb on + strand, within ABZR88_RS00800 at 154.352 kb on + strand, within ABZR88_RS00800
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 152,904 + ABZR88_RS00790 0.88 +0.2 152,905 - ABZR88_RS00790 0.88 +1.7 152,905 - ABZR88_RS00790 0.88 -1.2 153,162 - -0.8 153,193 + +0.3 153,257 - +0.1 153,267 - -0.3 153,277 - -0.3 153,340 + -1.5 153,409 - ABZR88_RS00795 0.24 -0.0 153,606 + ABZR88_RS00795 0.66 -1.0 153,606 + ABZR88_RS00795 0.66 -1.1 153,606 + ABZR88_RS00795 0.66 -0.3 153,614 - ABZR88_RS00795 0.68 +0.1 153,777 - +0.1 153,783 - +1.3 153,928 + -0.7 153,986 + ABZR88_RS00800 0.15 -1.2 154,052 + ABZR88_RS00800 0.25 -1.2 154,060 - ABZR88_RS00800 0.26 -1.4 154,203 - ABZR88_RS00800 0.48 +1.3 154,214 - ABZR88_RS00800 0.50 -0.3 154,241 + ABZR88_RS00800 0.54 -0.5 154,352 + ABZR88_RS00800 0.71 -0.6
Or see this region's nucleotide sequence