Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS00360 and ABZR88_RS00365 are separated by 347 nucleotides ABZR88_RS00365 and ABZR88_RS00370 overlap by 11 nucleotides ABZR88_RS00370 and ABZR88_RS00375 are separated by 36 nucleotides
ABZR88_RS00360: ABZR88_RS00360 - cysteine--tRNA ligase, at 71,558 to 73,018
_RS00360
ABZR88_RS00365: ABZR88_RS00365 - endonuclease/exonuclease/phosphatase family protein, at 73,366 to 74,478
_RS00365
ABZR88_RS00370: ABZR88_RS00370 - rhomboid family intramembrane serine protease, at 74,468 to 75,340
_RS00370
ABZR88_RS00375: ABZR88_RS00375 - rhomboid family intramembrane serine protease, at 75,377 to 76,129
_RS00375
Position (kb)
73
74
75 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 73.138 kb on + strand at 73.139 kb on - strand at 73.267 kb on + strand at 73.361 kb on + strand at 73.375 kb on + strand at 73.389 kb on + strand at 73.469 kb on + strand at 73.469 kb on + strand at 73.469 kb on + strand at 73.470 kb on - strand at 73.635 kb on + strand, within ABZR88_RS00365 at 73.655 kb on - strand, within ABZR88_RS00365 at 73.655 kb on - strand, within ABZR88_RS00365 at 73.747 kb on - strand, within ABZR88_RS00365 at 73.757 kb on + strand, within ABZR88_RS00365 at 73.758 kb on - strand, within ABZR88_RS00365 at 73.992 kb on + strand, within ABZR88_RS00365 at 74.172 kb on + strand, within ABZR88_RS00365 at 74.173 kb on - strand, within ABZR88_RS00365 at 74.217 kb on + strand, within ABZR88_RS00365 at 74.243 kb on - strand, within ABZR88_RS00365 at 74.319 kb on + strand, within ABZR88_RS00365 at 74.398 kb on - strand at 74.398 kb on - strand at 74.551 kb on + strand at 74.561 kb on - strand, within ABZR88_RS00370 at 74.647 kb on + strand, within ABZR88_RS00370 at 74.786 kb on + strand, within ABZR88_RS00370 at 74.786 kb on + strand, within ABZR88_RS00370 at 74.889 kb on - strand, within ABZR88_RS00370 at 75.011 kb on + strand, within ABZR88_RS00370 at 75.076 kb on + strand, within ABZR88_RS00370 at 75.175 kb on - strand, within ABZR88_RS00370 at 75.334 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 73,138 + -1.7 73,139 - +0.0 73,267 + +0.0 73,361 + +1.3 73,375 + -0.2 73,389 + -0.5 73,469 + -0.6 73,469 + -1.0 73,469 + -0.7 73,470 - -0.2 73,635 + ABZR88_RS00365 0.24 -0.6 73,655 - ABZR88_RS00365 0.26 -0.4 73,655 - ABZR88_RS00365 0.26 -0.7 73,747 - ABZR88_RS00365 0.34 -0.2 73,757 + ABZR88_RS00365 0.35 -0.7 73,758 - ABZR88_RS00365 0.35 -0.7 73,992 + ABZR88_RS00365 0.56 -0.5 74,172 + ABZR88_RS00365 0.72 -2.8 74,173 - ABZR88_RS00365 0.73 -1.5 74,217 + ABZR88_RS00365 0.76 -1.2 74,243 - ABZR88_RS00365 0.79 -1.9 74,319 + ABZR88_RS00365 0.86 +1.3 74,398 - -1.0 74,398 - -1.2 74,551 + -1.1 74,561 - ABZR88_RS00370 0.11 +0.8 74,647 + ABZR88_RS00370 0.21 -0.2 74,786 + ABZR88_RS00370 0.36 -0.2 74,786 + ABZR88_RS00370 0.36 +0.5 74,889 - ABZR88_RS00370 0.48 +0.7 75,011 + ABZR88_RS00370 0.62 +0.0 75,076 + ABZR88_RS00370 0.70 -1.9 75,175 - ABZR88_RS00370 0.81 -0.7 75,334 + -1.2
Or see this region's nucleotide sequence