Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS00365

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS00360 and ABZR88_RS00365 are separated by 347 nucleotidesABZR88_RS00365 and ABZR88_RS00370 overlap by 11 nucleotidesABZR88_RS00370 and ABZR88_RS00375 are separated by 36 nucleotides ABZR88_RS00360: ABZR88_RS00360 - cysteine--tRNA ligase, at 71,558 to 73,018 _RS00360 ABZR88_RS00365: ABZR88_RS00365 - endonuclease/exonuclease/phosphatase family protein, at 73,366 to 74,478 _RS00365 ABZR88_RS00370: ABZR88_RS00370 - rhomboid family intramembrane serine protease, at 74,468 to 75,340 _RS00370 ABZR88_RS00375: ABZR88_RS00375 - rhomboid family intramembrane serine protease, at 75,377 to 76,129 _RS00375 Position (kb) 73 74 75Strain fitness (log2 ratio) -3 -2 -1 0 1at 73.138 kb on + strandat 73.139 kb on - strandat 73.267 kb on + strandat 73.361 kb on + strandat 73.375 kb on + strandat 73.389 kb on + strandat 73.469 kb on + strandat 73.469 kb on + strandat 73.469 kb on + strandat 73.470 kb on - strandat 73.635 kb on + strand, within ABZR88_RS00365at 73.655 kb on - strand, within ABZR88_RS00365at 73.655 kb on - strand, within ABZR88_RS00365at 73.747 kb on - strand, within ABZR88_RS00365at 73.757 kb on + strand, within ABZR88_RS00365at 73.758 kb on - strand, within ABZR88_RS00365at 73.992 kb on + strand, within ABZR88_RS00365at 74.172 kb on + strand, within ABZR88_RS00365at 74.173 kb on - strand, within ABZR88_RS00365at 74.217 kb on + strand, within ABZR88_RS00365at 74.243 kb on - strand, within ABZR88_RS00365at 74.319 kb on + strand, within ABZR88_RS00365at 74.398 kb on - strandat 74.398 kb on - strandat 74.551 kb on + strandat 74.561 kb on - strand, within ABZR88_RS00370at 74.647 kb on + strand, within ABZR88_RS00370at 74.786 kb on + strand, within ABZR88_RS00370at 74.786 kb on + strand, within ABZR88_RS00370at 74.889 kb on - strand, within ABZR88_RS00370at 75.011 kb on + strand, within ABZR88_RS00370at 75.076 kb on + strand, within ABZR88_RS00370at 75.175 kb on - strand, within ABZR88_RS00370at 75.334 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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73,138 + -1.7
73,139 - +0.0
73,267 + +0.0
73,361 + +1.3
73,375 + -0.2
73,389 + -0.5
73,469 + -0.6
73,469 + -1.0
73,469 + -0.7
73,470 - -0.2
73,635 + ABZR88_RS00365 0.24 -0.6
73,655 - ABZR88_RS00365 0.26 -0.4
73,655 - ABZR88_RS00365 0.26 -0.7
73,747 - ABZR88_RS00365 0.34 -0.2
73,757 + ABZR88_RS00365 0.35 -0.7
73,758 - ABZR88_RS00365 0.35 -0.7
73,992 + ABZR88_RS00365 0.56 -0.5
74,172 + ABZR88_RS00365 0.72 -2.8
74,173 - ABZR88_RS00365 0.73 -1.5
74,217 + ABZR88_RS00365 0.76 -1.2
74,243 - ABZR88_RS00365 0.79 -1.9
74,319 + ABZR88_RS00365 0.86 +1.3
74,398 - -1.0
74,398 - -1.2
74,551 + -1.1
74,561 - ABZR88_RS00370 0.11 +0.8
74,647 + ABZR88_RS00370 0.21 -0.2
74,786 + ABZR88_RS00370 0.36 -0.2
74,786 + ABZR88_RS00370 0.36 +0.5
74,889 - ABZR88_RS00370 0.48 +0.7
75,011 + ABZR88_RS00370 0.62 +0.0
75,076 + ABZR88_RS00370 0.70 -1.9
75,175 - ABZR88_RS00370 0.81 -0.7
75,334 + -1.2

Or see this region's nucleotide sequence