Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS00130

Experiment: R2A motility; outer cut

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS00125 and ABZR88_RS00130 are separated by 277 nucleotidesABZR88_RS00130 and ABZR88_RS00135 are separated by 145 nucleotidesABZR88_RS00135 and ABZR88_RS00140 are separated by 271 nucleotides ABZR88_RS00125: ABZR88_RS00125 - 2-hydroxyacid dehydrogenase, at 20,794 to 21,732 _RS00125 ABZR88_RS00130: ABZR88_RS00130 - transcription elongation factor GreA, at 22,010 to 22,483 _RS00130 ABZR88_RS00135: ABZR88_RS00135 - HIT family protein, at 22,629 to 23,045 _RS00135 ABZR88_RS00140: ABZR88_RS00140 - AAA family ATPase, at 23,317 to 23,853 _RS00140 Position (kb) 22 23Strain fitness (log2 ratio) -1 0 1 2at 21.775 kb on + strandat 21.986 kb on + strandat 22.025 kb on + strandat 22.025 kb on + strandat 22.065 kb on + strand, within ABZR88_RS00130at 22.376 kb on - strand, within ABZR88_RS00130at 22.485 kb on - strandat 22.495 kb on + strandat 22.536 kb on + strandat 22.537 kb on - strandat 22.537 kb on - strandat 22.651 kb on + strandat 22.666 kb on + strandat 22.770 kb on + strand, within ABZR88_RS00135at 22.770 kb on + strand, within ABZR88_RS00135at 22.798 kb on - strand, within ABZR88_RS00135at 22.880 kb on - strand, within ABZR88_RS00135at 22.922 kb on + strand, within ABZR88_RS00135at 22.922 kb on + strand, within ABZR88_RS00135at 23.269 kb on - strandat 23.296 kb on + strandat 23.465 kb on + strand, within ABZR88_RS00140at 23.466 kb on - strand, within ABZR88_RS00140

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A motility; outer cut
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21,775 + -1.1
21,986 + +2.5
22,025 + -0.3
22,025 + +0.3
22,065 + ABZR88_RS00130 0.12 -1.3
22,376 - ABZR88_RS00130 0.77 -1.2
22,485 - +0.3
22,495 + -0.4
22,536 + +0.2
22,537 - -0.7
22,537 - +0.6
22,651 + +0.5
22,666 + -1.0
22,770 + ABZR88_RS00135 0.34 +0.2
22,770 + ABZR88_RS00135 0.34 +0.3
22,798 - ABZR88_RS00135 0.41 +1.4
22,880 - ABZR88_RS00135 0.60 +0.6
22,922 + ABZR88_RS00135 0.70 +0.2
22,922 + ABZR88_RS00135 0.70 -0.8
23,269 - +0.7
23,296 + +0.1
23,465 + ABZR88_RS00140 0.28 +0.4
23,466 - ABZR88_RS00140 0.28 -0.0

Or see this region's nucleotide sequence