Experiment: R2A 15C; 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS07325 and ABZR88_RS07330 are separated by 8 nucleotides ABZR88_RS07330 and ABZR88_RS07335 are separated by 892 nucleotides
ABZR88_RS07325: ABZR88_RS07325 - RagB/SusD family nutrient uptake outer membrane protein, at 1,821,976 to 1,823,682
_RS07325
ABZR88_RS07330: ABZR88_RS07330 - TonB-dependent receptor, at 1,823,691 to 1,826,846
_RS07330
ABZR88_RS07335: ABZR88_RS07335 - glycosyl hydrolase 53 family protein, at 1,827,739 to 1,828,788
_RS07335
Position (kb)
1823
1824
1825
1826
1827 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1822.712 kb on + strand, within ABZR88_RS07325 at 1822.956 kb on + strand, within ABZR88_RS07325 at 1822.998 kb on - strand, within ABZR88_RS07325 at 1823.016 kb on + strand, within ABZR88_RS07325 at 1823.026 kb on - strand, within ABZR88_RS07325 at 1823.056 kb on - strand, within ABZR88_RS07325 at 1823.117 kb on - strand, within ABZR88_RS07325 at 1823.137 kb on - strand, within ABZR88_RS07325 at 1823.137 kb on - strand, within ABZR88_RS07325 at 1823.138 kb on + strand, within ABZR88_RS07325 at 1823.360 kb on - strand, within ABZR88_RS07325 at 1823.529 kb on - strand at 1823.665 kb on + strand at 1823.665 kb on + strand at 1823.666 kb on - strand at 1823.795 kb on - strand at 1824.049 kb on + strand, within ABZR88_RS07330 at 1824.050 kb on - strand, within ABZR88_RS07330 at 1824.142 kb on + strand, within ABZR88_RS07330 at 1824.167 kb on - strand, within ABZR88_RS07330 at 1824.198 kb on - strand, within ABZR88_RS07330 at 1824.221 kb on + strand, within ABZR88_RS07330 at 1824.320 kb on - strand, within ABZR88_RS07330 at 1824.406 kb on + strand, within ABZR88_RS07330 at 1824.555 kb on + strand, within ABZR88_RS07330 at 1824.730 kb on + strand, within ABZR88_RS07330 at 1824.737 kb on + strand, within ABZR88_RS07330 at 1824.821 kb on + strand, within ABZR88_RS07330 at 1824.826 kb on - strand, within ABZR88_RS07330 at 1824.935 kb on - strand, within ABZR88_RS07330 at 1825.114 kb on - strand, within ABZR88_RS07330 at 1825.203 kb on - strand, within ABZR88_RS07330 at 1825.322 kb on + strand, within ABZR88_RS07330 at 1825.406 kb on - strand, within ABZR88_RS07330 at 1825.415 kb on + strand, within ABZR88_RS07330 at 1825.437 kb on - strand, within ABZR88_RS07330 at 1825.440 kb on - strand, within ABZR88_RS07330 at 1825.600 kb on + strand, within ABZR88_RS07330 at 1825.623 kb on + strand, within ABZR88_RS07330 at 1825.816 kb on + strand, within ABZR88_RS07330 at 1825.842 kb on + strand, within ABZR88_RS07330 at 1825.880 kb on + strand, within ABZR88_RS07330 at 1825.889 kb on - strand, within ABZR88_RS07330 at 1826.050 kb on + strand, within ABZR88_RS07330 at 1826.051 kb on - strand, within ABZR88_RS07330 at 1826.145 kb on - strand, within ABZR88_RS07330 at 1826.145 kb on - strand, within ABZR88_RS07330 at 1826.152 kb on + strand, within ABZR88_RS07330 at 1826.466 kb on + strand, within ABZR88_RS07330 at 1826.467 kb on - strand, within ABZR88_RS07330 at 1826.519 kb on + strand, within ABZR88_RS07330 at 1826.548 kb on - strand at 1826.551 kb on + strand at 1826.576 kb on + strand at 1826.606 kb on - strand at 1826.673 kb on - strand at 1826.739 kb on + strand at 1826.809 kb on + strand at 1826.809 kb on + strand at 1827.022 kb on - strand at 1827.148 kb on - strand at 1827.173 kb on - strand at 1827.205 kb on + strand at 1827.292 kb on + strand at 1827.713 kb on - strand at 1827.730 kb on - strand at 1827.799 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 15C; 72 hours remove 1,822,712 + ABZR88_RS07325 0.43 +0.0 1,822,956 + ABZR88_RS07325 0.57 +0.1 1,822,998 - ABZR88_RS07325 0.60 -0.1 1,823,016 + ABZR88_RS07325 0.61 -0.2 1,823,026 - ABZR88_RS07325 0.62 +1.8 1,823,056 - ABZR88_RS07325 0.63 +0.3 1,823,117 - ABZR88_RS07325 0.67 +0.2 1,823,137 - ABZR88_RS07325 0.68 +0.2 1,823,137 - ABZR88_RS07325 0.68 -0.2 1,823,138 + ABZR88_RS07325 0.68 +0.0 1,823,360 - ABZR88_RS07325 0.81 -1.0 1,823,529 - +0.1 1,823,665 + +0.0 1,823,665 + -0.7 1,823,666 - +0.2 1,823,795 - +0.1 1,824,049 + ABZR88_RS07330 0.11 -0.1 1,824,050 - ABZR88_RS07330 0.11 -0.2 1,824,142 + ABZR88_RS07330 0.14 -0.4 1,824,167 - ABZR88_RS07330 0.15 +0.0 1,824,198 - ABZR88_RS07330 0.16 +0.7 1,824,221 + ABZR88_RS07330 0.17 -0.6 1,824,320 - ABZR88_RS07330 0.20 +0.2 1,824,406 + ABZR88_RS07330 0.23 +0.4 1,824,555 + ABZR88_RS07330 0.27 -0.3 1,824,730 + ABZR88_RS07330 0.33 -0.7 1,824,737 + ABZR88_RS07330 0.33 -0.3 1,824,821 + ABZR88_RS07330 0.36 -0.7 1,824,826 - ABZR88_RS07330 0.36 -0.2 1,824,935 - ABZR88_RS07330 0.39 -0.1 1,825,114 - ABZR88_RS07330 0.45 +1.2 1,825,203 - ABZR88_RS07330 0.48 -0.1 1,825,322 + ABZR88_RS07330 0.52 +0.0 1,825,406 - ABZR88_RS07330 0.54 +0.5 1,825,415 + ABZR88_RS07330 0.55 +0.8 1,825,437 - ABZR88_RS07330 0.55 +0.1 1,825,440 - ABZR88_RS07330 0.55 +0.1 1,825,600 + ABZR88_RS07330 0.60 -0.1 1,825,623 + ABZR88_RS07330 0.61 -0.4 1,825,816 + ABZR88_RS07330 0.67 +1.8 1,825,842 + ABZR88_RS07330 0.68 +0.4 1,825,880 + ABZR88_RS07330 0.69 -0.3 1,825,889 - ABZR88_RS07330 0.70 -1.8 1,826,050 + ABZR88_RS07330 0.75 +0.0 1,826,051 - ABZR88_RS07330 0.75 -0.1 1,826,145 - ABZR88_RS07330 0.78 -0.6 1,826,145 - ABZR88_RS07330 0.78 -0.3 1,826,152 + ABZR88_RS07330 0.78 +0.1 1,826,466 + ABZR88_RS07330 0.88 +0.5 1,826,467 - ABZR88_RS07330 0.88 +0.3 1,826,519 + ABZR88_RS07330 0.90 -1.3 1,826,548 - -0.1 1,826,551 + +1.4 1,826,576 + -0.4 1,826,606 - -0.1 1,826,673 - +0.1 1,826,739 + -0.2 1,826,809 + +0.0 1,826,809 + -0.2 1,827,022 - +1.0 1,827,148 - +1.0 1,827,173 - -1.3 1,827,205 + -0.2 1,827,292 + -1.8 1,827,713 - -1.6 1,827,730 - -0.6 1,827,799 + -0.1
Or see this region's nucleotide sequence