Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS07330

Experiment: R2A 15C; 72 hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS07325 and ABZR88_RS07330 are separated by 8 nucleotidesABZR88_RS07330 and ABZR88_RS07335 are separated by 892 nucleotides ABZR88_RS07325: ABZR88_RS07325 - RagB/SusD family nutrient uptake outer membrane protein, at 1,821,976 to 1,823,682 _RS07325 ABZR88_RS07330: ABZR88_RS07330 - TonB-dependent receptor, at 1,823,691 to 1,826,846 _RS07330 ABZR88_RS07335: ABZR88_RS07335 - glycosyl hydrolase 53 family protein, at 1,827,739 to 1,828,788 _RS07335 Position (kb) 1823 1824 1825 1826 1827Strain fitness (log2 ratio) -2 -1 0 1 2at 1822.712 kb on + strand, within ABZR88_RS07325at 1822.956 kb on + strand, within ABZR88_RS07325at 1822.998 kb on - strand, within ABZR88_RS07325at 1823.016 kb on + strand, within ABZR88_RS07325at 1823.026 kb on - strand, within ABZR88_RS07325at 1823.056 kb on - strand, within ABZR88_RS07325at 1823.117 kb on - strand, within ABZR88_RS07325at 1823.137 kb on - strand, within ABZR88_RS07325at 1823.137 kb on - strand, within ABZR88_RS07325at 1823.138 kb on + strand, within ABZR88_RS07325at 1823.360 kb on - strand, within ABZR88_RS07325at 1823.529 kb on - strandat 1823.665 kb on + strandat 1823.665 kb on + strandat 1823.666 kb on - strandat 1823.795 kb on - strandat 1824.049 kb on + strand, within ABZR88_RS07330at 1824.050 kb on - strand, within ABZR88_RS07330at 1824.142 kb on + strand, within ABZR88_RS07330at 1824.167 kb on - strand, within ABZR88_RS07330at 1824.198 kb on - strand, within ABZR88_RS07330at 1824.221 kb on + strand, within ABZR88_RS07330at 1824.320 kb on - strand, within ABZR88_RS07330at 1824.406 kb on + strand, within ABZR88_RS07330at 1824.555 kb on + strand, within ABZR88_RS07330at 1824.730 kb on + strand, within ABZR88_RS07330at 1824.737 kb on + strand, within ABZR88_RS07330at 1824.821 kb on + strand, within ABZR88_RS07330at 1824.826 kb on - strand, within ABZR88_RS07330at 1824.935 kb on - strand, within ABZR88_RS07330at 1825.114 kb on - strand, within ABZR88_RS07330at 1825.203 kb on - strand, within ABZR88_RS07330at 1825.322 kb on + strand, within ABZR88_RS07330at 1825.406 kb on - strand, within ABZR88_RS07330at 1825.415 kb on + strand, within ABZR88_RS07330at 1825.437 kb on - strand, within ABZR88_RS07330at 1825.440 kb on - strand, within ABZR88_RS07330at 1825.600 kb on + strand, within ABZR88_RS07330at 1825.623 kb on + strand, within ABZR88_RS07330at 1825.816 kb on + strand, within ABZR88_RS07330at 1825.842 kb on + strand, within ABZR88_RS07330at 1825.880 kb on + strand, within ABZR88_RS07330at 1825.889 kb on - strand, within ABZR88_RS07330at 1826.050 kb on + strand, within ABZR88_RS07330at 1826.051 kb on - strand, within ABZR88_RS07330at 1826.145 kb on - strand, within ABZR88_RS07330at 1826.145 kb on - strand, within ABZR88_RS07330at 1826.152 kb on + strand, within ABZR88_RS07330at 1826.466 kb on + strand, within ABZR88_RS07330at 1826.467 kb on - strand, within ABZR88_RS07330at 1826.519 kb on + strand, within ABZR88_RS07330at 1826.548 kb on - strandat 1826.551 kb on + strandat 1826.576 kb on + strandat 1826.606 kb on - strandat 1826.673 kb on - strandat 1826.739 kb on + strandat 1826.809 kb on + strandat 1826.809 kb on + strandat 1827.022 kb on - strandat 1827.148 kb on - strandat 1827.173 kb on - strandat 1827.205 kb on + strandat 1827.292 kb on + strandat 1827.713 kb on - strandat 1827.730 kb on - strandat 1827.799 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A 15C; 72 hours
remove
1,822,712 + ABZR88_RS07325 0.43 +0.0
1,822,956 + ABZR88_RS07325 0.57 +0.1
1,822,998 - ABZR88_RS07325 0.60 -0.1
1,823,016 + ABZR88_RS07325 0.61 -0.2
1,823,026 - ABZR88_RS07325 0.62 +1.8
1,823,056 - ABZR88_RS07325 0.63 +0.3
1,823,117 - ABZR88_RS07325 0.67 +0.2
1,823,137 - ABZR88_RS07325 0.68 +0.2
1,823,137 - ABZR88_RS07325 0.68 -0.2
1,823,138 + ABZR88_RS07325 0.68 +0.0
1,823,360 - ABZR88_RS07325 0.81 -1.0
1,823,529 - +0.1
1,823,665 + +0.0
1,823,665 + -0.7
1,823,666 - +0.2
1,823,795 - +0.1
1,824,049 + ABZR88_RS07330 0.11 -0.1
1,824,050 - ABZR88_RS07330 0.11 -0.2
1,824,142 + ABZR88_RS07330 0.14 -0.4
1,824,167 - ABZR88_RS07330 0.15 +0.0
1,824,198 - ABZR88_RS07330 0.16 +0.7
1,824,221 + ABZR88_RS07330 0.17 -0.6
1,824,320 - ABZR88_RS07330 0.20 +0.2
1,824,406 + ABZR88_RS07330 0.23 +0.4
1,824,555 + ABZR88_RS07330 0.27 -0.3
1,824,730 + ABZR88_RS07330 0.33 -0.7
1,824,737 + ABZR88_RS07330 0.33 -0.3
1,824,821 + ABZR88_RS07330 0.36 -0.7
1,824,826 - ABZR88_RS07330 0.36 -0.2
1,824,935 - ABZR88_RS07330 0.39 -0.1
1,825,114 - ABZR88_RS07330 0.45 +1.2
1,825,203 - ABZR88_RS07330 0.48 -0.1
1,825,322 + ABZR88_RS07330 0.52 +0.0
1,825,406 - ABZR88_RS07330 0.54 +0.5
1,825,415 + ABZR88_RS07330 0.55 +0.8
1,825,437 - ABZR88_RS07330 0.55 +0.1
1,825,440 - ABZR88_RS07330 0.55 +0.1
1,825,600 + ABZR88_RS07330 0.60 -0.1
1,825,623 + ABZR88_RS07330 0.61 -0.4
1,825,816 + ABZR88_RS07330 0.67 +1.8
1,825,842 + ABZR88_RS07330 0.68 +0.4
1,825,880 + ABZR88_RS07330 0.69 -0.3
1,825,889 - ABZR88_RS07330 0.70 -1.8
1,826,050 + ABZR88_RS07330 0.75 +0.0
1,826,051 - ABZR88_RS07330 0.75 -0.1
1,826,145 - ABZR88_RS07330 0.78 -0.6
1,826,145 - ABZR88_RS07330 0.78 -0.3
1,826,152 + ABZR88_RS07330 0.78 +0.1
1,826,466 + ABZR88_RS07330 0.88 +0.5
1,826,467 - ABZR88_RS07330 0.88 +0.3
1,826,519 + ABZR88_RS07330 0.90 -1.3
1,826,548 - -0.1
1,826,551 + +1.4
1,826,576 + -0.4
1,826,606 - -0.1
1,826,673 - +0.1
1,826,739 + -0.2
1,826,809 + +0.0
1,826,809 + -0.2
1,827,022 - +1.0
1,827,148 - +1.0
1,827,173 - -1.3
1,827,205 + -0.2
1,827,292 + -1.8
1,827,713 - -1.6
1,827,730 - -0.6
1,827,799 + -0.1

Or see this region's nucleotide sequence