Experiment: R2A 15C; 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS05835 and ABZR88_RS05840 are separated by 172 nucleotides ABZR88_RS05840 and ABZR88_RS05845 are separated by 18 nucleotides ABZR88_RS05845 and ABZR88_RS05850 are separated by 149 nucleotides
ABZR88_RS05835: ABZR88_RS05835 - DUF4397 domain-containing protein, at 1,424,434 to 1,425,378
_RS05835
ABZR88_RS05840: ABZR88_RS05840 - aldehyde reductase, at 1,425,551 to 1,426,600
_RS05840
ABZR88_RS05845: ABZR88_RS05845 - AraC family transcriptional regulator, at 1,426,619 to 1,427,404
_RS05845
ABZR88_RS05850: ABZR88_RS05850 - nucleoside hydrolase-like domain-containing protein, at 1,427,554 to 1,428,846
_RS05850
Position (kb) 1425
1426
1427 Strain fitness (log2 ratio) -1
0
1
2 at 1424.576 kb on + strand, within ABZR88_RS05835 at 1424.678 kb on - strand, within ABZR88_RS05835 at 1424.678 kb on - strand, within ABZR88_RS05835 at 1424.698 kb on + strand, within ABZR88_RS05835 at 1424.725 kb on + strand, within ABZR88_RS05835 at 1424.725 kb on + strand, within ABZR88_RS05835 at 1424.928 kb on + strand, within ABZR88_RS05835 at 1424.959 kb on + strand, within ABZR88_RS05835 at 1425.042 kb on - strand, within ABZR88_RS05835 at 1425.042 kb on - strand, within ABZR88_RS05835 at 1425.045 kb on + strand, within ABZR88_RS05835 at 1425.069 kb on - strand, within ABZR88_RS05835 at 1425.107 kb on + strand, within ABZR88_RS05835 at 1425.178 kb on - strand, within ABZR88_RS05835 at 1425.180 kb on - strand, within ABZR88_RS05835 at 1425.217 kb on - strand, within ABZR88_RS05835 at 1425.268 kb on - strand, within ABZR88_RS05835 at 1425.318 kb on + strand at 1425.318 kb on + strand at 1425.342 kb on + strand at 1425.362 kb on - strand at 1425.417 kb on + strand at 1425.461 kb on - strand at 1425.481 kb on + strand at 1425.482 kb on - strand at 1425.583 kb on - strand at 1425.636 kb on + strand at 1425.676 kb on - strand, within ABZR88_RS05840 at 1425.811 kb on - strand, within ABZR88_RS05840 at 1425.814 kb on - strand, within ABZR88_RS05840 at 1425.819 kb on + strand, within ABZR88_RS05840 at 1425.848 kb on - strand, within ABZR88_RS05840 at 1425.848 kb on - strand, within ABZR88_RS05840 at 1425.936 kb on + strand, within ABZR88_RS05840 at 1425.937 kb on - strand, within ABZR88_RS05840 at 1426.022 kb on - strand, within ABZR88_RS05840 at 1426.171 kb on + strand, within ABZR88_RS05840 at 1426.341 kb on + strand, within ABZR88_RS05840 at 1426.341 kb on + strand, within ABZR88_RS05840 at 1426.492 kb on - strand, within ABZR88_RS05840 at 1426.549 kb on + strand at 1426.549 kb on + strand at 1426.612 kb on + strand at 1426.627 kb on - strand at 1426.636 kb on - strand at 1426.665 kb on - strand at 1426.667 kb on - strand at 1427.015 kb on - strand, within ABZR88_RS05845 at 1427.080 kb on + strand, within ABZR88_RS05845 at 1427.141 kb on + strand, within ABZR88_RS05845 at 1427.141 kb on + strand, within ABZR88_RS05845 at 1427.142 kb on - strand, within ABZR88_RS05845 at 1427.142 kb on - strand, within ABZR88_RS05845 at 1427.143 kb on + strand, within ABZR88_RS05845
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 15C; 72 hours remove 1,424,576 + ABZR88_RS05835 0.15 -0.5 1,424,678 - ABZR88_RS05835 0.26 +0.2 1,424,678 - ABZR88_RS05835 0.26 +1.0 1,424,698 + ABZR88_RS05835 0.28 -0.0 1,424,725 + ABZR88_RS05835 0.31 +0.4 1,424,725 + ABZR88_RS05835 0.31 -0.2 1,424,928 + ABZR88_RS05835 0.52 +0.8 1,424,959 + ABZR88_RS05835 0.56 -0.2 1,425,042 - ABZR88_RS05835 0.64 +0.4 1,425,042 - ABZR88_RS05835 0.64 -0.7 1,425,045 + ABZR88_RS05835 0.65 -0.1 1,425,069 - ABZR88_RS05835 0.67 -0.4 1,425,107 + ABZR88_RS05835 0.71 -0.3 1,425,178 - ABZR88_RS05835 0.79 -0.2 1,425,180 - ABZR88_RS05835 0.79 -0.7 1,425,217 - ABZR88_RS05835 0.83 -0.1 1,425,268 - ABZR88_RS05835 0.88 -0.4 1,425,318 + +1.0 1,425,318 + +0.2 1,425,342 + -0.3 1,425,362 - -0.6 1,425,417 + +0.0 1,425,461 - -1.0 1,425,481 + -0.3 1,425,482 - -1.0 1,425,583 - +1.0 1,425,636 + -0.6 1,425,676 - ABZR88_RS05840 0.12 -0.2 1,425,811 - ABZR88_RS05840 0.25 +0.3 1,425,814 - ABZR88_RS05840 0.25 +2.0 1,425,819 + ABZR88_RS05840 0.26 -0.7 1,425,848 - ABZR88_RS05840 0.28 -1.4 1,425,848 - ABZR88_RS05840 0.28 +0.0 1,425,936 + ABZR88_RS05840 0.37 -0.3 1,425,937 - ABZR88_RS05840 0.37 +0.1 1,426,022 - ABZR88_RS05840 0.45 -0.1 1,426,171 + ABZR88_RS05840 0.59 -0.4 1,426,341 + ABZR88_RS05840 0.75 +0.0 1,426,341 + ABZR88_RS05840 0.75 -0.1 1,426,492 - ABZR88_RS05840 0.90 +0.3 1,426,549 + -0.4 1,426,549 + -0.0 1,426,612 + -0.1 1,426,627 - +0.1 1,426,636 - +0.1 1,426,665 - -1.0 1,426,667 - +0.1 1,427,015 - ABZR88_RS05845 0.50 +0.1 1,427,080 + ABZR88_RS05845 0.59 +0.0 1,427,141 + ABZR88_RS05845 0.66 -1.1 1,427,141 + ABZR88_RS05845 0.66 -0.4 1,427,142 - ABZR88_RS05845 0.67 -0.6 1,427,142 - ABZR88_RS05845 0.67 -0.3 1,427,143 + ABZR88_RS05845 0.67 -1.1
Or see this region's nucleotide sequence