Experiment: Bas45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjgM and rraB are separated by 176 nucleotides rraB and argF are separated by 161 nucleotides argF and HEPCGN_10030 are separated by 44 nucleotides
HEPCGN_10015: yjgM - Uncharacterized N-acetyltransferase YjgM, at 748,857 to 749,360
yjgM
HEPCGN_10020: rraB - ribonuclease E inhibitor RraB, at 749,537 to 749,953
rraB
HEPCGN_10025: argF - ornithine carbamoyltransferase, at 750,115 to 751,119
argF
HEPCGN_10030: HEPCGN_10030 - YhcH/YjgK/YiaL family protein, at 751,164 to 751,616
_10030
Position (kb) 750
751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 749.136 kb on + strand, within yjgM at 749.301 kb on + strand, within yjgM at 749.435 kb on + strand at 749.435 kb on + strand at 749.436 kb on - strand at 749.436 kb on - strand at 749.436 kb on - strand at 749.478 kb on + strand at 749.478 kb on + strand at 749.478 kb on + strand at 749.492 kb on - strand at 749.539 kb on - strand at 749.613 kb on + strand, within rraB at 749.613 kb on + strand, within rraB at 749.613 kb on + strand, within rraB at 749.631 kb on + strand, within rraB at 749.631 kb on + strand, within rraB at 749.859 kb on + strand, within rraB at 749.860 kb on - strand, within rraB at 749.982 kb on - strand at 750.114 kb on + strand at 750.115 kb on - strand at 750.115 kb on - strand at 750.115 kb on - strand at 750.132 kb on + strand at 750.316 kb on + strand, within argF at 750.316 kb on + strand, within argF at 750.316 kb on + strand, within argF at 750.340 kb on + strand, within argF at 750.416 kb on - strand, within argF at 750.416 kb on - strand, within argF at 750.416 kb on - strand, within argF at 750.799 kb on - strand, within argF at 750.803 kb on - strand, within argF at 750.803 kb on - strand, within argF at 750.803 kb on - strand, within argF at 751.001 kb on - strand, within argF at 751.085 kb on + strand at 751.086 kb on - strand at 751.095 kb on + strand at 751.096 kb on - strand at 751.104 kb on + strand at 751.165 kb on + strand at 751.181 kb on + strand at 751.181 kb on + strand at 751.181 kb on + strand at 751.181 kb on + strand at 751.181 kb on + strand at 751.182 kb on - strand at 751.185 kb on + strand at 751.186 kb on - strand at 751.186 kb on - strand at 751.250 kb on - strand, within HEPCGN_10030 at 751.274 kb on + strand, within HEPCGN_10030 at 751.274 kb on + strand, within HEPCGN_10030 at 751.275 kb on - strand, within HEPCGN_10030 at 751.325 kb on + strand, within HEPCGN_10030 at 751.326 kb on - strand, within HEPCGN_10030 at 751.370 kb on + strand, within HEPCGN_10030 at 751.371 kb on - strand, within HEPCGN_10030 at 751.395 kb on + strand, within HEPCGN_10030 at 751.396 kb on - strand, within HEPCGN_10030 at 751.398 kb on + strand, within HEPCGN_10030 at 751.417 kb on + strand, within HEPCGN_10030 at 751.418 kb on - strand, within HEPCGN_10030 at 751.429 kb on + strand, within HEPCGN_10030 at 751.590 kb on + strand at 751.619 kb on + strand at 751.619 kb on + strand at 751.737 kb on - strand at 751.756 kb on - strand at 751.802 kb on + strand at 751.802 kb on + strand at 751.813 kb on + strand at 751.824 kb on + strand at 751.831 kb on + strand at 751.836 kb on + strand at 751.881 kb on + strand at 751.899 kb on - strand at 751.902 kb on + strand at 751.952 kb on - strand at 751.996 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas45 remove 749,136 + yjgM HEPCGN_10015 0.55 -0.5 749,301 + yjgM HEPCGN_10015 0.88 -1.3 749,435 + -0.9 749,435 + +0.7 749,436 - -0.2 749,436 - -0.4 749,436 - -0.4 749,478 + -0.2 749,478 + +1.1 749,478 + -0.1 749,492 - -1.6 749,539 - -0.1 749,613 + rraB HEPCGN_10020 0.18 -2.7 749,613 + rraB HEPCGN_10020 0.18 -3.2 749,613 + rraB HEPCGN_10020 0.18 +1.6 749,631 + rraB HEPCGN_10020 0.23 -0.8 749,631 + rraB HEPCGN_10020 0.23 -2.8 749,859 + rraB HEPCGN_10020 0.77 -0.7 749,860 - rraB HEPCGN_10020 0.77 +0.1 749,982 - +0.4 750,114 + -0.0 750,115 - +1.1 750,115 - +0.6 750,115 - -0.3 750,132 + +0.4 750,316 + argF HEPCGN_10025 0.20 +2.4 750,316 + argF HEPCGN_10025 0.20 +0.3 750,316 + argF HEPCGN_10025 0.20 +0.1 750,340 + argF HEPCGN_10025 0.22 -0.6 750,416 - argF HEPCGN_10025 0.30 +0.7 750,416 - argF HEPCGN_10025 0.30 +1.1 750,416 - argF HEPCGN_10025 0.30 +0.1 750,799 - argF HEPCGN_10025 0.68 +0.3 750,803 - argF HEPCGN_10025 0.68 -0.0 750,803 - argF HEPCGN_10025 0.68 -0.3 750,803 - argF HEPCGN_10025 0.68 +0.5 751,001 - argF HEPCGN_10025 0.88 -0.1 751,085 + +1.0 751,086 - +0.6 751,095 + +0.0 751,096 - +0.3 751,104 + +0.4 751,165 + -0.4 751,181 + -0.9 751,181 + -0.1 751,181 + +1.2 751,181 + +1.7 751,181 + -0.9 751,182 - -0.6 751,185 + -0.1 751,186 - +0.3 751,186 - +0.3 751,250 - HEPCGN_10030 0.19 +0.1 751,274 + HEPCGN_10030 0.24 +0.4 751,274 + HEPCGN_10030 0.24 -0.3 751,275 - HEPCGN_10030 0.25 +0.4 751,325 + HEPCGN_10030 0.36 +0.0 751,326 - HEPCGN_10030 0.36 -0.7 751,370 + HEPCGN_10030 0.45 -0.2 751,371 - HEPCGN_10030 0.46 +0.5 751,395 + HEPCGN_10030 0.51 +0.2 751,396 - HEPCGN_10030 0.51 -0.5 751,398 + HEPCGN_10030 0.52 -0.1 751,417 + HEPCGN_10030 0.56 -1.7 751,418 - HEPCGN_10030 0.56 -1.5 751,429 + HEPCGN_10030 0.58 +0.0 751,590 + -0.2 751,619 + -0.2 751,619 + -0.1 751,737 - -0.3 751,756 - +0.2 751,802 + -2.8 751,802 + -0.5 751,813 + +1.0 751,824 + -0.2 751,831 + -1.9 751,836 + -0.6 751,881 + +0.4 751,899 - +0.8 751,902 + -0.0 751,952 - -0.3 751,996 - +1.7
Or see this region's nucleotide sequence