Strain Fitness in Escherichia coli ECOR38 around HEPCGN_03430

Experiment: Bas45

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyaiO and HEPCGN_03425 are separated by 42 nucleotidesHEPCGN_03425 and bcsA are separated by 34 nucleotidesbcsA and HEPCGN_03435 are separated by 134 nucleotides HEPCGN_03420: yaiO - Outer membrane protein YaiO, at 587,197 to 587,928 yaiO HEPCGN_03425: HEPCGN_03425 - acetyltransferase, at 587,971 to 588,495 _03425 HEPCGN_03430: bcsA - Glycosyl transferase family 2, at 588,530 to 589,726 bcsA HEPCGN_03435: HEPCGN_03435 - Uncharacterized deacetylase YaiS, at 589,861 to 590,394 _03435 Position (kb) 588 589 590Strain fitness (log2 ratio) -2 -1 0 1at 587.537 kb on - strand, within yaiOat 587.574 kb on - strand, within yaiOat 587.949 kb on + strandat 587.957 kb on + strandat 587.958 kb on - strandat 588.028 kb on - strand, within HEPCGN_03425at 588.689 kb on + strand, within bcsAat 588.754 kb on + strand, within bcsAat 588.766 kb on + strand, within bcsAat 588.766 kb on + strand, within bcsAat 589.106 kb on - strand, within bcsAat 589.216 kb on + strand, within bcsAat 589.217 kb on - strand, within bcsAat 589.333 kb on + strand, within bcsAat 589.334 kb on - strand, within bcsAat 589.335 kb on + strand, within bcsAat 589.425 kb on - strand, within bcsAat 589.657 kb on + strandat 589.674 kb on - strandat 590.102 kb on + strand, within HEPCGN_03435at 590.401 kb on + strandat 590.627 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas45
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587,537 - yaiO HEPCGN_03420 0.46 +0.1
587,574 - yaiO HEPCGN_03420 0.52 -0.2
587,949 + -0.6
587,957 + -0.5
587,958 - +0.5
588,028 - HEPCGN_03425 0.11 -0.1
588,689 + bcsA HEPCGN_03430 0.13 -1.3
588,754 + bcsA HEPCGN_03430 0.19 -0.9
588,766 + bcsA HEPCGN_03430 0.20 +0.5
588,766 + bcsA HEPCGN_03430 0.20 +0.5
589,106 - bcsA HEPCGN_03430 0.48 -0.4
589,216 + bcsA HEPCGN_03430 0.57 -2.0
589,217 - bcsA HEPCGN_03430 0.57 -1.0
589,333 + bcsA HEPCGN_03430 0.67 -0.4
589,334 - bcsA HEPCGN_03430 0.67 -0.9
589,335 + bcsA HEPCGN_03430 0.67 +0.4
589,425 - bcsA HEPCGN_03430 0.75 -0.6
589,657 + +0.6
589,674 - -0.5
590,102 + HEPCGN_03435 0.45 +0.2
590,401 + -1.2
590,627 - +0.5

Or see this region's nucleotide sequence