Experiment: Bas45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt terY and pphC are separated by 77 nucleotides pphC and yegI overlap by 4 nucleotides yegI and yegD are separated by 12 nucleotides
HEPCGN_02940: terY - Uncharacterized protein YegL, at 493,033 to 493,692
terY
HEPCGN_02945: pphC - Serine/threonine-protein phosphatase 3, at 493,770 to 494,450
pphC
HEPCGN_02950: yegI - protein kinase YegI, at 494,447 to 496,387
yegI
HEPCGN_02955: yegD - molecular chaperone, at 496,400 to 497,752
yegD
Position (kb) 494
495
496
497 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 493.486 kb on - strand, within terY at 493.486 kb on - strand, within terY at 493.707 kb on + strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.890 kb on + strand, within pphC at 493.890 kb on + strand, within pphC at 493.892 kb on + strand, within pphC at 493.892 kb on + strand, within pphC at 493.892 kb on + strand, within pphC at 493.893 kb on - strand, within pphC at 493.893 kb on - strand, within pphC at 493.893 kb on - strand, within pphC at 493.929 kb on - strand, within pphC at 494.146 kb on - strand, within pphC at 494.146 kb on - strand, within pphC at 494.146 kb on - strand, within pphC at 494.240 kb on + strand, within pphC at 494.353 kb on + strand, within pphC at 494.406 kb on - strand at 494.417 kb on + strand at 494.461 kb on - strand at 494.461 kb on - strand at 494.462 kb on + strand at 494.463 kb on - strand at 494.463 kb on - strand at 494.463 kb on - strand at 494.464 kb on + strand at 494.464 kb on + strand at 494.464 kb on + strand at 494.464 kb on + strand at 494.464 kb on + strand at 494.528 kb on + strand at 494.568 kb on - strand at 494.611 kb on + strand at 494.645 kb on + strand, within yegI at 494.726 kb on - strand, within yegI at 494.747 kb on + strand, within yegI at 494.748 kb on - strand, within yegI at 494.804 kb on + strand, within yegI at 494.805 kb on - strand, within yegI at 494.871 kb on + strand, within yegI at 494.872 kb on - strand, within yegI at 494.888 kb on - strand, within yegI at 494.964 kb on + strand, within yegI at 495.108 kb on - strand, within yegI at 495.180 kb on - strand, within yegI at 495.190 kb on + strand, within yegI at 495.191 kb on - strand, within yegI at 495.342 kb on + strand, within yegI at 495.598 kb on - strand, within yegI at 495.617 kb on + strand, within yegI at 495.691 kb on + strand, within yegI at 495.694 kb on + strand, within yegI at 495.807 kb on - strand, within yegI at 496.219 kb on + strand at 496.528 kb on + strand at 496.542 kb on + strand, within yegD at 496.543 kb on - strand, within yegD at 496.543 kb on - strand, within yegD at 496.739 kb on + strand, within yegD at 496.749 kb on + strand, within yegD at 496.754 kb on + strand, within yegD at 496.846 kb on + strand, within yegD at 497.005 kb on + strand, within yegD at 497.072 kb on + strand, within yegD at 497.107 kb on + strand, within yegD
Per-strain Table
Position Strand Gene LocusTag Fraction Bas45 remove 493,486 - terY HEPCGN_02940 0.69 +0.1 493,486 - terY HEPCGN_02940 0.69 +0.4 493,707 + -0.5 493,708 - -0.5 493,708 - -0.6 493,890 + pphC HEPCGN_02945 0.18 +0.6 493,890 + pphC HEPCGN_02945 0.18 -0.7 493,892 + pphC HEPCGN_02945 0.18 -0.6 493,892 + pphC HEPCGN_02945 0.18 -0.7 493,892 + pphC HEPCGN_02945 0.18 -0.1 493,893 - pphC HEPCGN_02945 0.18 +0.7 493,893 - pphC HEPCGN_02945 0.18 +0.5 493,893 - pphC HEPCGN_02945 0.18 +1.4 493,929 - pphC HEPCGN_02945 0.23 +0.1 494,146 - pphC HEPCGN_02945 0.55 -0.1 494,146 - pphC HEPCGN_02945 0.55 -0.3 494,146 - pphC HEPCGN_02945 0.55 +0.3 494,240 + pphC HEPCGN_02945 0.69 -0.3 494,353 + pphC HEPCGN_02945 0.86 +0.0 494,406 - -1.2 494,417 + -1.5 494,461 - +0.3 494,461 - -0.4 494,462 + +0.1 494,463 - -1.5 494,463 - -0.6 494,463 - +0.4 494,464 + -0.1 494,464 + -0.8 494,464 + +0.0 494,464 + -0.5 494,464 + -1.3 494,528 + +1.5 494,568 - -0.2 494,611 + -0.6 494,645 + yegI HEPCGN_02950 0.10 -0.1 494,726 - yegI HEPCGN_02950 0.14 -2.1 494,747 + yegI HEPCGN_02950 0.15 -1.6 494,748 - yegI HEPCGN_02950 0.16 +0.7 494,804 + yegI HEPCGN_02950 0.18 -0.4 494,805 - yegI HEPCGN_02950 0.18 +1.0 494,871 + yegI HEPCGN_02950 0.22 -0.4 494,872 - yegI HEPCGN_02950 0.22 +0.3 494,888 - yegI HEPCGN_02950 0.23 +0.5 494,964 + yegI HEPCGN_02950 0.27 -0.8 495,108 - yegI HEPCGN_02950 0.34 -1.4 495,180 - yegI HEPCGN_02950 0.38 -0.9 495,190 + yegI HEPCGN_02950 0.38 -0.7 495,191 - yegI HEPCGN_02950 0.38 +2.9 495,342 + yegI HEPCGN_02950 0.46 -0.7 495,598 - yegI HEPCGN_02950 0.59 -0.8 495,617 + yegI HEPCGN_02950 0.60 -1.3 495,691 + yegI HEPCGN_02950 0.64 -0.7 495,694 + yegI HEPCGN_02950 0.64 +0.0 495,807 - yegI HEPCGN_02950 0.70 -0.6 496,219 + +1.0 496,528 + +1.1 496,542 + yegD HEPCGN_02955 0.10 +1.1 496,543 - yegD HEPCGN_02955 0.11 +1.3 496,543 - yegD HEPCGN_02955 0.11 -1.1 496,739 + yegD HEPCGN_02955 0.25 -1.4 496,749 + yegD HEPCGN_02955 0.26 -1.7 496,754 + yegD HEPCGN_02955 0.26 -0.4 496,846 + yegD HEPCGN_02955 0.33 +0.1 497,005 + yegD HEPCGN_02955 0.45 -0.8 497,072 + yegD HEPCGN_02955 0.50 -0.5 497,107 + yegD HEPCGN_02955 0.52 +0.7
Or see this region's nucleotide sequence