Experiment: Bas45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yehX and yehW are separated by 4 nucleotides yehW and yohO overlap by 20 nucleotides yohO and mlrA are separated by 59 nucleotides mlrA and fimB are separated by 74 nucleotides
HEPCGN_02245: yehX - glycine betaine ABC transporter ATP binding protein YehX, at 375,330 to 376,256
yehX
HEPCGN_02250: yehW - glycine betaine ABC transporter permease YehW, at 376,261 to 376,992
yehW
HEPCGN_02255: yohO - protein YohO, at 376,973 to 377,080
yohO
HEPCGN_02260: mlrA - HTH-type transcriptional regulator MlrA, at 377,140 to 377,787
mlrA
HEPCGN_02265: fimB - site-specific integrase, at 377,862 to 379,148
fimB
Position (kb) 376
377
378 Strain fitness (log2 ratio) -2
-1
0
1 at 376.040 kb on + strand, within yehX at 376.073 kb on + strand, within yehX at 376.073 kb on + strand, within yehX at 376.073 kb on + strand, within yehX at 376.074 kb on - strand, within yehX at 376.087 kb on - strand, within yehX at 376.254 kb on + strand at 376.255 kb on - strand at 376.261 kb on - strand at 376.527 kb on + strand, within yehW at 376.527 kb on + strand, within yehW at 376.527 kb on + strand, within yehW at 376.527 kb on + strand, within yehW at 376.528 kb on - strand, within yehW at 376.528 kb on - strand, within yehW at 376.615 kb on - strand, within yehW at 376.631 kb on - strand, within yehW at 376.710 kb on + strand, within yehW at 376.752 kb on - strand, within yehW at 376.855 kb on - strand, within yehW at 376.888 kb on - strand, within yehW at 376.895 kb on - strand, within yehW at 376.997 kb on - strand, within yohO at 376.997 kb on - strand, within yohO at 376.999 kb on - strand, within yohO at 377.069 kb on - strand, within yohO at 377.073 kb on - strand at 377.081 kb on - strand at 377.111 kb on + strand at 377.116 kb on + strand at 377.142 kb on - strand at 377.241 kb on + strand, within mlrA at 377.385 kb on + strand, within mlrA at 377.509 kb on - strand, within mlrA at 377.600 kb on + strand, within mlrA at 377.600 kb on + strand, within mlrA at 377.659 kb on - strand, within mlrA at 377.876 kb on + strand at 377.886 kb on - strand at 377.886 kb on - strand at 377.926 kb on - strand at 378.017 kb on + strand, within fimB at 378.023 kb on + strand, within fimB at 378.023 kb on + strand, within fimB at 378.024 kb on - strand, within fimB at 378.052 kb on + strand, within fimB at 378.052 kb on + strand, within fimB at 378.053 kb on - strand, within fimB at 378.056 kb on + strand, within fimB at 378.056 kb on + strand, within fimB at 378.056 kb on + strand, within fimB at 378.056 kb on + strand, within fimB at 378.056 kb on + strand, within fimB at 378.057 kb on - strand, within fimB at 378.057 kb on - strand, within fimB at 378.057 kb on - strand, within fimB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas45 remove 376,040 + yehX HEPCGN_02245 0.77 +0.5 376,073 + yehX HEPCGN_02245 0.80 -2.1 376,073 + yehX HEPCGN_02245 0.80 +0.5 376,073 + yehX HEPCGN_02245 0.80 +0.1 376,074 - yehX HEPCGN_02245 0.80 +0.1 376,087 - yehX HEPCGN_02245 0.82 +1.0 376,254 + -1.6 376,255 - -1.0 376,261 - -0.7 376,527 + yehW HEPCGN_02250 0.36 -1.6 376,527 + yehW HEPCGN_02250 0.36 -0.6 376,527 + yehW HEPCGN_02250 0.36 +0.5 376,527 + yehW HEPCGN_02250 0.36 -0.7 376,528 - yehW HEPCGN_02250 0.36 -0.6 376,528 - yehW HEPCGN_02250 0.36 -0.7 376,615 - yehW HEPCGN_02250 0.48 -1.6 376,631 - yehW HEPCGN_02250 0.51 +0.5 376,710 + yehW HEPCGN_02250 0.61 -0.6 376,752 - yehW HEPCGN_02250 0.67 -0.3 376,855 - yehW HEPCGN_02250 0.81 -1.9 376,888 - yehW HEPCGN_02250 0.86 -0.9 376,895 - yehW HEPCGN_02250 0.87 -1.4 376,997 - yohO HEPCGN_02255 0.22 +0.1 376,997 - yohO HEPCGN_02255 0.22 -1.1 376,999 - yohO HEPCGN_02255 0.24 -1.6 377,069 - yohO HEPCGN_02255 0.89 +0.3 377,073 - +0.4 377,081 - -1.2 377,111 + -2.2 377,116 + -0.5 377,142 - -0.7 377,241 + mlrA HEPCGN_02260 0.16 -0.8 377,385 + mlrA HEPCGN_02260 0.38 -0.3 377,509 - mlrA HEPCGN_02260 0.57 +0.4 377,600 + mlrA HEPCGN_02260 0.71 +0.0 377,600 + mlrA HEPCGN_02260 0.71 -2.1 377,659 - mlrA HEPCGN_02260 0.80 +0.7 377,876 + +0.6 377,886 - +0.8 377,886 - +0.7 377,926 - -1.7 378,017 + fimB HEPCGN_02265 0.12 +0.4 378,023 + fimB HEPCGN_02265 0.13 -0.7 378,023 + fimB HEPCGN_02265 0.13 +0.1 378,024 - fimB HEPCGN_02265 0.13 +0.0 378,052 + fimB HEPCGN_02265 0.15 -0.6 378,052 + fimB HEPCGN_02265 0.15 -1.4 378,053 - fimB HEPCGN_02265 0.15 -0.7 378,056 + fimB HEPCGN_02265 0.15 -1.0 378,056 + fimB HEPCGN_02265 0.15 -0.1 378,056 + fimB HEPCGN_02265 0.15 -0.1 378,056 + fimB HEPCGN_02265 0.15 -1.0 378,056 + fimB HEPCGN_02265 0.15 -0.6 378,057 - fimB HEPCGN_02265 0.15 -0.1 378,057 - fimB HEPCGN_02265 0.15 +0.8 378,057 - fimB HEPCGN_02265 0.15 +0.6
Or see this region's nucleotide sequence