Experiment: Bas45
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pagP and cspE are separated by 174 nucleotides cspE and crcB are separated by 53 nucleotides crcB and tatE are separated by 92 nucleotides
HEPCGN_00850: pagP - lipid IV(A) palmitoyltransferase PagP, at 100,158 to 100,718
pagP
HEPCGN_00855: cspE - transcription antiterminator/RNA stability regulator CspE, at 100,893 to 101,102
cspE
HEPCGN_00860: crcB - fluoride efflux transporter CrcB, at 101,156 to 101,539
crcB
HEPCGN_00865: tatE - deaminated glutathione amidase, at 101,632 to 102,420
tatE
Position (kb) 101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 100.440 kb on + strand, within pagP at 100.440 kb on + strand, within pagP at 100.454 kb on + strand, within pagP at 100.455 kb on - strand, within pagP at 100.588 kb on - strand, within pagP at 100.667 kb on + strand at 100.672 kb on - strand at 100.672 kb on - strand at 100.792 kb on - strand at 100.840 kb on + strand at 100.879 kb on + strand at 100.880 kb on - strand at 100.885 kb on + strand at 100.898 kb on + strand at 100.916 kb on + strand, within cspE at 100.916 kb on + strand, within cspE at 101.015 kb on + strand, within cspE at 101.101 kb on - strand at 101.105 kb on + strand at 101.158 kb on - strand at 101.240 kb on + strand, within crcB at 101.241 kb on - strand, within crcB at 101.337 kb on - strand, within crcB at 101.471 kb on - strand, within crcB at 101.475 kb on - strand, within crcB at 101.535 kb on - strand at 101.564 kb on + strand at 101.565 kb on - strand at 101.573 kb on + strand at 101.574 kb on - strand at 101.574 kb on - strand at 101.609 kb on + strand at 101.609 kb on + strand at 101.729 kb on + strand, within tatE at 101.730 kb on - strand, within tatE at 101.786 kb on + strand, within tatE at 101.853 kb on + strand, within tatE at 101.914 kb on - strand, within tatE at 101.971 kb on + strand, within tatE at 102.023 kb on + strand, within tatE at 102.081 kb on - strand, within tatE at 102.114 kb on - strand, within tatE at 102.135 kb on - strand, within tatE at 102.220 kb on + strand, within tatE at 102.221 kb on - strand, within tatE at 102.222 kb on + strand, within tatE at 102.222 kb on + strand, within tatE at 102.222 kb on + strand, within tatE at 102.222 kb on + strand, within tatE at 102.222 kb on + strand, within tatE at 102.275 kb on + strand, within tatE at 102.276 kb on - strand, within tatE at 102.327 kb on + strand, within tatE at 102.530 kb on - strand at 102.530 kb on - strand at 102.531 kb on + strand at 102.531 kb on + strand at 102.532 kb on - strand at 102.532 kb on - strand at 102.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas45 remove 100,440 + pagP HEPCGN_00850 0.50 +0.2 100,440 + pagP HEPCGN_00850 0.50 -1.3 100,454 + pagP HEPCGN_00850 0.53 +0.6 100,455 - pagP HEPCGN_00850 0.53 -0.1 100,588 - pagP HEPCGN_00850 0.77 -1.7 100,667 + -0.8 100,672 - +0.5 100,672 - -0.9 100,792 - -0.1 100,840 + +1.0 100,879 + -0.1 100,880 - -0.1 100,885 + -0.4 100,898 + +1.0 100,916 + cspE HEPCGN_00855 0.11 -2.0 100,916 + cspE HEPCGN_00855 0.11 +0.7 101,015 + cspE HEPCGN_00855 0.58 +1.6 101,101 - +0.2 101,105 + +0.5 101,158 - -1.1 101,240 + crcB HEPCGN_00860 0.22 -1.1 101,241 - crcB HEPCGN_00860 0.22 -0.2 101,337 - crcB HEPCGN_00860 0.47 -0.4 101,471 - crcB HEPCGN_00860 0.82 +0.2 101,475 - crcB HEPCGN_00860 0.83 -0.6 101,535 - +0.1 101,564 + -0.1 101,565 - +0.4 101,573 + +0.5 101,574 - -1.8 101,574 - -0.1 101,609 + +0.7 101,609 + +1.0 101,729 + tatE HEPCGN_00865 0.12 -0.2 101,730 - tatE HEPCGN_00865 0.12 +2.7 101,786 + tatE HEPCGN_00865 0.20 -0.1 101,853 + tatE HEPCGN_00865 0.28 -0.8 101,914 - tatE HEPCGN_00865 0.36 +0.5 101,971 + tatE HEPCGN_00865 0.43 -3.1 102,023 + tatE HEPCGN_00865 0.50 -0.5 102,081 - tatE HEPCGN_00865 0.57 -1.1 102,114 - tatE HEPCGN_00865 0.61 -1.3 102,135 - tatE HEPCGN_00865 0.64 -3.0 102,220 + tatE HEPCGN_00865 0.75 +1.5 102,221 - tatE HEPCGN_00865 0.75 -0.1 102,222 + tatE HEPCGN_00865 0.75 +0.4 102,222 + tatE HEPCGN_00865 0.75 -0.6 102,222 + tatE HEPCGN_00865 0.75 -0.2 102,222 + tatE HEPCGN_00865 0.75 -0.4 102,222 + tatE HEPCGN_00865 0.75 +0.4 102,275 + tatE HEPCGN_00865 0.81 -2.7 102,276 - tatE HEPCGN_00865 0.82 -2.0 102,327 + tatE HEPCGN_00865 0.88 -0.5 102,530 - +0.1 102,530 - -0.8 102,531 + -1.5 102,531 + +0.9 102,532 - -0.4 102,532 - -1.7 102,532 - +0.5
Or see this region's nucleotide sequence