Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS07225 and ABZR88_RS07230 are separated by 1 nucleotides ABZR88_RS07230 and ABZR88_RS07235 are separated by 5 nucleotides ABZR88_RS07235 and ABZR88_RS07240 are separated by 373 nucleotides
ABZR88_RS07225: ABZR88_RS07225 - sodium:solute symporter family protein, at 1,784,062 to 1,785,759
_RS07225
ABZR88_RS07230: ABZR88_RS07230 - alpha/beta hydrolase, at 1,785,761 to 1,786,690
_RS07230
ABZR88_RS07235: ABZR88_RS07235 - sialate O-acetylesterase, at 1,786,696 to 1,788,093
_RS07235
ABZR88_RS07240: ABZR88_RS07240 - SusC/RagA family TonB-linked outer membrane protein, at 1,788,467 to 1,791,289
_RS07240
Position (kb) 1786
1787
1788
1789 Strain fitness (log2 ratio) -1
0
1
2 at 1785.760 kb on + strand at 1785.775 kb on + strand at 1785.778 kb on - strand at 1785.834 kb on - strand at 1785.933 kb on + strand, within ABZR88_RS07230 at 1785.934 kb on - strand, within ABZR88_RS07230 at 1786.331 kb on - strand, within ABZR88_RS07230 at 1786.480 kb on + strand, within ABZR88_RS07230 at 1786.721 kb on + strand at 1786.722 kb on - strand at 1786.958 kb on + strand, within ABZR88_RS07235 at 1786.983 kb on + strand, within ABZR88_RS07235 at 1787.037 kb on + strand, within ABZR88_RS07235 at 1787.037 kb on + strand, within ABZR88_RS07235 at 1787.283 kb on + strand, within ABZR88_RS07235 at 1787.302 kb on - strand, within ABZR88_RS07235 at 1787.404 kb on - strand, within ABZR88_RS07235 at 1787.407 kb on + strand, within ABZR88_RS07235 at 1787.665 kb on - strand, within ABZR88_RS07235 at 1787.814 kb on + strand, within ABZR88_RS07235 at 1787.826 kb on - strand, within ABZR88_RS07235 at 1787.835 kb on + strand, within ABZR88_RS07235 at 1788.163 kb on - strand at 1788.552 kb on + strand at 1788.553 kb on - strand at 1788.788 kb on - strand, within ABZR88_RS07240 at 1789.054 kb on + strand, within ABZR88_RS07240 at 1789.070 kb on + strand, within ABZR88_RS07240
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 1,785,760 + -0.1 1,785,775 + -1.0 1,785,778 - +0.1 1,785,834 - -0.2 1,785,933 + ABZR88_RS07230 0.18 -0.7 1,785,934 - ABZR88_RS07230 0.19 +1.3 1,786,331 - ABZR88_RS07230 0.61 +0.0 1,786,480 + ABZR88_RS07230 0.77 +1.5 1,786,721 + -0.0 1,786,722 - -0.0 1,786,958 + ABZR88_RS07235 0.19 -0.6 1,786,983 + ABZR88_RS07235 0.21 +0.3 1,787,037 + ABZR88_RS07235 0.24 -0.4 1,787,037 + ABZR88_RS07235 0.24 +0.1 1,787,283 + ABZR88_RS07235 0.42 +0.3 1,787,302 - ABZR88_RS07235 0.43 +0.1 1,787,404 - ABZR88_RS07235 0.51 +2.5 1,787,407 + ABZR88_RS07235 0.51 -0.4 1,787,665 - ABZR88_RS07235 0.69 -0.6 1,787,814 + ABZR88_RS07235 0.80 -0.5 1,787,826 - ABZR88_RS07235 0.81 +0.2 1,787,835 + ABZR88_RS07235 0.81 +0.1 1,788,163 - +0.0 1,788,552 + -0.9 1,788,553 - -0.6 1,788,788 - ABZR88_RS07240 0.11 +0.7 1,789,054 + ABZR88_RS07240 0.21 +0.7 1,789,070 + ABZR88_RS07240 0.21 -0.5
Or see this region's nucleotide sequence