Experiment: R2A motility; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS02505 and ABZR88_RS02510 are separated by 4 nucleotides ABZR88_RS02510 and ABZR88_RS02515 are separated by 56 nucleotides ABZR88_RS02515 and ABZR88_RS02520 are separated by 9 nucleotides
ABZR88_RS02505: ABZR88_RS02505 - hypothetical protein, at 571,714 to 572,961
_RS02505
ABZR88_RS02510: ABZR88_RS02510 - toxin-antitoxin system YwqK family antitoxin, at 572,966 to 573,508
_RS02510
ABZR88_RS02515: ABZR88_RS02515 - hypothetical protein, at 573,565 to 574,083
_RS02515
ABZR88_RS02520: ABZR88_RS02520 - hypothetical protein, at 574,093 to 575,052
_RS02520
Position (kb) 573
574
575 Strain fitness (log2 ratio) -1
0
1
2 at 572.579 kb on - strand, within ABZR88_RS02505 at 572.941 kb on + strand at 572.941 kb on + strand at 572.942 kb on - strand at 573.101 kb on - strand, within ABZR88_RS02510 at 573.354 kb on + strand, within ABZR88_RS02510 at 573.397 kb on - strand, within ABZR88_RS02510 at 573.488 kb on - strand at 573.488 kb on - strand at 573.548 kb on + strand at 573.584 kb on - strand at 573.652 kb on + strand, within ABZR88_RS02515 at 573.711 kb on + strand, within ABZR88_RS02515 at 573.776 kb on - strand, within ABZR88_RS02515 at 573.832 kb on + strand, within ABZR88_RS02515 at 573.834 kb on + strand, within ABZR88_RS02515 at 573.996 kb on + strand, within ABZR88_RS02515 at 573.997 kb on - strand, within ABZR88_RS02515 at 574.242 kb on + strand, within ABZR88_RS02520 at 574.254 kb on + strand, within ABZR88_RS02520 at 574.299 kb on + strand, within ABZR88_RS02520 at 574.303 kb on - strand, within ABZR88_RS02520 at 574.460 kb on + strand, within ABZR88_RS02520 at 574.528 kb on - strand, within ABZR88_RS02520 at 574.586 kb on - strand, within ABZR88_RS02520 at 574.696 kb on - strand, within ABZR88_RS02520 at 574.784 kb on - strand, within ABZR88_RS02520 at 574.904 kb on + strand, within ABZR88_RS02520 at 575.005 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A motility; outer cut remove 572,579 - ABZR88_RS02505 0.69 -0.2 572,941 + -0.7 572,941 + +0.2 572,942 - +0.7 573,101 - ABZR88_RS02510 0.25 -0.6 573,354 + ABZR88_RS02510 0.71 +0.7 573,397 - ABZR88_RS02510 0.79 +0.1 573,488 - +0.0 573,488 - -0.5 573,548 + -1.4 573,584 - -0.4 573,652 + ABZR88_RS02515 0.17 -0.3 573,711 + ABZR88_RS02515 0.28 +0.5 573,776 - ABZR88_RS02515 0.41 -0.3 573,832 + ABZR88_RS02515 0.51 +0.3 573,834 + ABZR88_RS02515 0.52 +1.3 573,996 + ABZR88_RS02515 0.83 +0.7 573,997 - ABZR88_RS02515 0.83 -0.2 574,242 + ABZR88_RS02520 0.16 +0.3 574,254 + ABZR88_RS02520 0.17 +0.1 574,299 + ABZR88_RS02520 0.21 -1.0 574,303 - ABZR88_RS02520 0.22 +2.2 574,460 + ABZR88_RS02520 0.38 -1.0 574,528 - ABZR88_RS02520 0.45 -0.3 574,586 - ABZR88_RS02520 0.51 +0.1 574,696 - ABZR88_RS02520 0.63 +0.3 574,784 - ABZR88_RS02520 0.72 +0.3 574,904 + ABZR88_RS02520 0.84 -0.3 575,005 + -0.1
Or see this region's nucleotide sequence