Experiment: R2A 30C; 144 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS19625 and ABZR88_RS19630 are separated by 105 nucleotides ABZR88_RS19630 and ABZR88_RS19635 are separated by 27 nucleotides
ABZR88_RS19625: ABZR88_RS19625 - hypothetical protein, at 4,767,796 to 4,768,806
_RS19625
ABZR88_RS19630: ABZR88_RS19630 - outer membrane beta-barrel protein, at 4,768,912 to 4,770,063
_RS19630
ABZR88_RS19635: ABZR88_RS19635 - hypothetical protein, at 4,770,091 to 4,772,565
_RS19635
Position (kb)
4768
4769
4770
4771 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4768.003 kb on + strand, within ABZR88_RS19625 at 4768.027 kb on + strand, within ABZR88_RS19625 at 4768.028 kb on - strand, within ABZR88_RS19625 at 4768.110 kb on + strand, within ABZR88_RS19625 at 4768.111 kb on - strand, within ABZR88_RS19625 at 4768.111 kb on - strand, within ABZR88_RS19625 at 4768.111 kb on - strand, within ABZR88_RS19625 at 4768.300 kb on - strand, within ABZR88_RS19625 at 4768.300 kb on - strand, within ABZR88_RS19625 at 4768.314 kb on + strand, within ABZR88_RS19625 at 4768.314 kb on + strand, within ABZR88_RS19625 at 4768.331 kb on + strand, within ABZR88_RS19625 at 4768.531 kb on + strand, within ABZR88_RS19625 at 4768.616 kb on + strand, within ABZR88_RS19625 at 4768.710 kb on + strand at 4768.805 kb on - strand at 4768.891 kb on + strand at 4768.939 kb on - strand at 4768.986 kb on + strand at 4768.986 kb on + strand at 4769.296 kb on + strand, within ABZR88_RS19630 at 4769.296 kb on + strand, within ABZR88_RS19630 at 4769.395 kb on - strand, within ABZR88_RS19630 at 4769.489 kb on - strand, within ABZR88_RS19630 at 4769.516 kb on - strand, within ABZR88_RS19630 at 4769.562 kb on + strand, within ABZR88_RS19630 at 4769.835 kb on + strand, within ABZR88_RS19630 at 4770.177 kb on + strand at 4770.378 kb on - strand, within ABZR88_RS19635 at 4770.378 kb on - strand, within ABZR88_RS19635 at 4770.515 kb on - strand, within ABZR88_RS19635 at 4770.561 kb on + strand, within ABZR88_RS19635 at 4770.576 kb on - strand, within ABZR88_RS19635 at 4770.697 kb on - strand, within ABZR88_RS19635 at 4770.800 kb on - strand, within ABZR88_RS19635 at 4770.893 kb on + strand, within ABZR88_RS19635
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 30C; 144 hours remove 4,768,003 + ABZR88_RS19625 0.20 -0.4 4,768,027 + ABZR88_RS19625 0.23 -0.3 4,768,028 - ABZR88_RS19625 0.23 +0.0 4,768,110 + ABZR88_RS19625 0.31 +0.1 4,768,111 - ABZR88_RS19625 0.31 +0.6 4,768,111 - ABZR88_RS19625 0.31 -0.1 4,768,111 - ABZR88_RS19625 0.31 +1.1 4,768,300 - ABZR88_RS19625 0.50 -0.1 4,768,300 - ABZR88_RS19625 0.50 +0.3 4,768,314 + ABZR88_RS19625 0.51 +0.3 4,768,314 + ABZR88_RS19625 0.51 +0.1 4,768,331 + ABZR88_RS19625 0.53 -0.5 4,768,531 + ABZR88_RS19625 0.73 -0.2 4,768,616 + ABZR88_RS19625 0.81 -0.6 4,768,710 + +0.3 4,768,805 - -0.5 4,768,891 + +0.0 4,768,939 - -0.2 4,768,986 + +0.5 4,768,986 + -1.0 4,769,296 + ABZR88_RS19630 0.33 +1.1 4,769,296 + ABZR88_RS19630 0.33 +0.3 4,769,395 - ABZR88_RS19630 0.42 -0.2 4,769,489 - ABZR88_RS19630 0.50 -2.8 4,769,516 - ABZR88_RS19630 0.52 -0.1 4,769,562 + ABZR88_RS19630 0.56 +0.1 4,769,835 + ABZR88_RS19630 0.80 -0.4 4,770,177 + -0.9 4,770,378 - ABZR88_RS19635 0.12 -0.2 4,770,378 - ABZR88_RS19635 0.12 +0.1 4,770,515 - ABZR88_RS19635 0.17 -0.3 4,770,561 + ABZR88_RS19635 0.19 -0.6 4,770,576 - ABZR88_RS19635 0.20 -0.7 4,770,697 - ABZR88_RS19635 0.24 -0.0 4,770,800 - ABZR88_RS19635 0.29 +0.1 4,770,893 + ABZR88_RS19635 0.32 -1.7
Or see this region's nucleotide sequence