Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS13800

Experiment: R2A 30C; 144 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS13795 and ABZR88_RS13800 are separated by 127 nucleotidesABZR88_RS13800 and ABZR88_RS13805 are separated by 21 nucleotidesABZR88_RS13805 and ABZR88_RS13810 are separated by 176 nucleotides ABZR88_RS13795: ABZR88_RS13795 - rhamnogalacturonan acetylesterase, at 3,444,949 to 3,445,788 _RS13795 ABZR88_RS13800: ABZR88_RS13800 - hypothetical protein, at 3,445,916 to 3,446,269 _RS13800 ABZR88_RS13805: ABZR88_RS13805 - hypothetical protein, at 3,446,291 to 3,446,608 _RS13805 ABZR88_RS13810: ABZR88_RS13810 - SDR family NAD(P)-dependent oxidoreductase, at 3,446,785 to 3,447,579 _RS13810 Position (kb) 3445 3446 3447Strain fitness (log2 ratio) -1 0 1 2at 3445.139 kb on + strand, within ABZR88_RS13795at 3445.273 kb on + strand, within ABZR88_RS13795at 3445.273 kb on + strand, within ABZR88_RS13795at 3445.360 kb on - strand, within ABZR88_RS13795at 3445.425 kb on + strand, within ABZR88_RS13795at 3445.485 kb on + strand, within ABZR88_RS13795at 3445.540 kb on - strand, within ABZR88_RS13795at 3445.543 kb on + strand, within ABZR88_RS13795at 3445.547 kb on + strand, within ABZR88_RS13795at 3445.773 kb on - strandat 3445.875 kb on + strandat 3445.876 kb on - strandat 3445.876 kb on - strandat 3446.035 kb on + strand, within ABZR88_RS13800at 3446.108 kb on - strand, within ABZR88_RS13800at 3446.170 kb on - strand, within ABZR88_RS13800at 3446.170 kb on - strand, within ABZR88_RS13800at 3446.228 kb on + strand, within ABZR88_RS13800at 3446.450 kb on - strand, within ABZR88_RS13805at 3446.463 kb on - strand, within ABZR88_RS13805at 3446.493 kb on + strand, within ABZR88_RS13805at 3446.584 kb on - strandat 3446.758 kb on + strandat 3446.759 kb on - strandat 3446.792 kb on + strandat 3446.864 kb on + strandat 3446.882 kb on + strand, within ABZR88_RS13810at 3447.041 kb on + strand, within ABZR88_RS13810at 3447.087 kb on + strand, within ABZR88_RS13810at 3447.120 kb on - strand, within ABZR88_RS13810at 3447.126 kb on - strand, within ABZR88_RS13810at 3447.137 kb on + strand, within ABZR88_RS13810at 3447.155 kb on - strand, within ABZR88_RS13810

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 30C; 144 hours
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3,445,139 + ABZR88_RS13795 0.23 -0.4
3,445,273 + ABZR88_RS13795 0.39 +2.4
3,445,273 + ABZR88_RS13795 0.39 +0.8
3,445,360 - ABZR88_RS13795 0.49 -0.2
3,445,425 + ABZR88_RS13795 0.57 -0.2
3,445,485 + ABZR88_RS13795 0.64 -0.3
3,445,540 - ABZR88_RS13795 0.70 -0.2
3,445,543 + ABZR88_RS13795 0.71 -0.1
3,445,547 + ABZR88_RS13795 0.71 -0.2
3,445,773 - +1.1
3,445,875 + +1.3
3,445,876 - +0.2
3,445,876 - -0.3
3,446,035 + ABZR88_RS13800 0.34 +0.1
3,446,108 - ABZR88_RS13800 0.54 -0.3
3,446,170 - ABZR88_RS13800 0.72 +0.6
3,446,170 - ABZR88_RS13800 0.72 -0.1
3,446,228 + ABZR88_RS13800 0.88 +0.3
3,446,450 - ABZR88_RS13805 0.50 +0.3
3,446,463 - ABZR88_RS13805 0.54 -0.2
3,446,493 + ABZR88_RS13805 0.64 -0.7
3,446,584 - -0.8
3,446,758 + -0.6
3,446,759 - -1.0
3,446,792 + -0.5
3,446,864 + -0.1
3,446,882 + ABZR88_RS13810 0.12 +2.0
3,447,041 + ABZR88_RS13810 0.32 +1.6
3,447,087 + ABZR88_RS13810 0.38 -0.2
3,447,120 - ABZR88_RS13810 0.42 +1.0
3,447,126 - ABZR88_RS13810 0.43 +0.2
3,447,137 + ABZR88_RS13810 0.44 +0.1
3,447,155 - ABZR88_RS13810 0.47 -0.6

Or see this region's nucleotide sequence