Experiment: R2A 30C; 144 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS13795 and ABZR88_RS13800 are separated by 127 nucleotides ABZR88_RS13800 and ABZR88_RS13805 are separated by 21 nucleotides ABZR88_RS13805 and ABZR88_RS13810 are separated by 176 nucleotides
ABZR88_RS13795: ABZR88_RS13795 - rhamnogalacturonan acetylesterase, at 3,444,949 to 3,445,788
_RS13795
ABZR88_RS13800: ABZR88_RS13800 - hypothetical protein, at 3,445,916 to 3,446,269
_RS13800
ABZR88_RS13805: ABZR88_RS13805 - hypothetical protein, at 3,446,291 to 3,446,608
_RS13805
ABZR88_RS13810: ABZR88_RS13810 - SDR family NAD(P)-dependent oxidoreductase, at 3,446,785 to 3,447,579
_RS13810
Position (kb)
3445
3446
3447 Strain fitness (log2 ratio)
-1
0
1
2 at 3445.139 kb on + strand, within ABZR88_RS13795 at 3445.273 kb on + strand, within ABZR88_RS13795 at 3445.273 kb on + strand, within ABZR88_RS13795 at 3445.360 kb on - strand, within ABZR88_RS13795 at 3445.425 kb on + strand, within ABZR88_RS13795 at 3445.485 kb on + strand, within ABZR88_RS13795 at 3445.540 kb on - strand, within ABZR88_RS13795 at 3445.543 kb on + strand, within ABZR88_RS13795 at 3445.547 kb on + strand, within ABZR88_RS13795 at 3445.773 kb on - strand at 3445.875 kb on + strand at 3445.876 kb on - strand at 3445.876 kb on - strand at 3446.035 kb on + strand, within ABZR88_RS13800 at 3446.108 kb on - strand, within ABZR88_RS13800 at 3446.170 kb on - strand, within ABZR88_RS13800 at 3446.170 kb on - strand, within ABZR88_RS13800 at 3446.228 kb on + strand, within ABZR88_RS13800 at 3446.450 kb on - strand, within ABZR88_RS13805 at 3446.463 kb on - strand, within ABZR88_RS13805 at 3446.493 kb on + strand, within ABZR88_RS13805 at 3446.584 kb on - strand at 3446.758 kb on + strand at 3446.759 kb on - strand at 3446.792 kb on + strand at 3446.864 kb on + strand at 3446.882 kb on + strand, within ABZR88_RS13810 at 3447.041 kb on + strand, within ABZR88_RS13810 at 3447.087 kb on + strand, within ABZR88_RS13810 at 3447.120 kb on - strand, within ABZR88_RS13810 at 3447.126 kb on - strand, within ABZR88_RS13810 at 3447.137 kb on + strand, within ABZR88_RS13810 at 3447.155 kb on - strand, within ABZR88_RS13810
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 30C; 144 hours remove 3,445,139 + ABZR88_RS13795 0.23 -0.4 3,445,273 + ABZR88_RS13795 0.39 +2.4 3,445,273 + ABZR88_RS13795 0.39 +0.8 3,445,360 - ABZR88_RS13795 0.49 -0.2 3,445,425 + ABZR88_RS13795 0.57 -0.2 3,445,485 + ABZR88_RS13795 0.64 -0.3 3,445,540 - ABZR88_RS13795 0.70 -0.2 3,445,543 + ABZR88_RS13795 0.71 -0.1 3,445,547 + ABZR88_RS13795 0.71 -0.2 3,445,773 - +1.1 3,445,875 + +1.3 3,445,876 - +0.2 3,445,876 - -0.3 3,446,035 + ABZR88_RS13800 0.34 +0.1 3,446,108 - ABZR88_RS13800 0.54 -0.3 3,446,170 - ABZR88_RS13800 0.72 +0.6 3,446,170 - ABZR88_RS13800 0.72 -0.1 3,446,228 + ABZR88_RS13800 0.88 +0.3 3,446,450 - ABZR88_RS13805 0.50 +0.3 3,446,463 - ABZR88_RS13805 0.54 -0.2 3,446,493 + ABZR88_RS13805 0.64 -0.7 3,446,584 - -0.8 3,446,758 + -0.6 3,446,759 - -1.0 3,446,792 + -0.5 3,446,864 + -0.1 3,446,882 + ABZR88_RS13810 0.12 +2.0 3,447,041 + ABZR88_RS13810 0.32 +1.6 3,447,087 + ABZR88_RS13810 0.38 -0.2 3,447,120 - ABZR88_RS13810 0.42 +1.0 3,447,126 - ABZR88_RS13810 0.43 +0.2 3,447,137 + ABZR88_RS13810 0.44 +0.1 3,447,155 - ABZR88_RS13810 0.47 -0.6
Or see this region's nucleotide sequence