Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12400

Experiment: R2A 30C; 144 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS12395 and ABZR88_RS12400 are separated by 1 nucleotidesABZR88_RS12400 and ABZR88_RS12405 overlap by 4 nucleotides ABZR88_RS12395: ABZR88_RS12395 - ImuA family protein, at 3,055,181 to 3,055,924 _RS12395 ABZR88_RS12400: ABZR88_RS12400 - DNA polymerase Y family protein, at 3,055,926 to 3,057,431 _RS12400 ABZR88_RS12405: ABZR88_RS12405 - error-prone DNA polymerase, at 3,057,428 to 3,060,676 _RS12405 Position (kb) 3055 3056 3057 3058Strain fitness (log2 ratio) -1 0 1 2at 3054.939 kb on + strandat 3055.003 kb on - strandat 3055.063 kb on - strandat 3055.067 kb on + strandat 3055.117 kb on + strandat 3055.123 kb on + strandat 3055.126 kb on - strandat 3055.130 kb on - strandat 3055.387 kb on + strand, within ABZR88_RS12395at 3055.678 kb on + strand, within ABZR88_RS12395at 3055.709 kb on - strand, within ABZR88_RS12395at 3055.771 kb on + strand, within ABZR88_RS12395at 3055.912 kb on - strandat 3055.943 kb on - strandat 3056.088 kb on - strand, within ABZR88_RS12400at 3056.101 kb on + strand, within ABZR88_RS12400at 3056.246 kb on - strand, within ABZR88_RS12400at 3056.440 kb on + strand, within ABZR88_RS12400at 3056.572 kb on + strand, within ABZR88_RS12400at 3056.693 kb on - strand, within ABZR88_RS12400at 3056.810 kb on - strand, within ABZR88_RS12400at 3056.897 kb on - strand, within ABZR88_RS12400at 3057.358 kb on - strandat 3057.589 kb on - strandat 3057.641 kb on - strandat 3057.707 kb on - strandat 3057.972 kb on - strand, within ABZR88_RS12405at 3058.068 kb on + strand, within ABZR88_RS12405at 3058.149 kb on + strand, within ABZR88_RS12405at 3058.350 kb on + strand, within ABZR88_RS12405

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 30C; 144 hours
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3,054,939 + +2.5
3,055,003 - -0.4
3,055,063 - +0.2
3,055,067 + -0.4
3,055,117 + -0.4
3,055,123 + -0.2
3,055,126 - -0.8
3,055,130 - -0.4
3,055,387 + ABZR88_RS12395 0.28 +1.4
3,055,678 + ABZR88_RS12395 0.67 +0.0
3,055,709 - ABZR88_RS12395 0.71 -0.6
3,055,771 + ABZR88_RS12395 0.79 +0.0
3,055,912 - -0.3
3,055,943 - +0.2
3,056,088 - ABZR88_RS12400 0.11 -0.1
3,056,101 + ABZR88_RS12400 0.12 +0.1
3,056,246 - ABZR88_RS12400 0.21 -0.4
3,056,440 + ABZR88_RS12400 0.34 -0.2
3,056,572 + ABZR88_RS12400 0.43 +0.3
3,056,693 - ABZR88_RS12400 0.51 -0.3
3,056,810 - ABZR88_RS12400 0.59 -0.7
3,056,897 - ABZR88_RS12400 0.64 -0.5
3,057,358 - -0.2
3,057,589 - -0.2
3,057,641 - +0.9
3,057,707 - -0.7
3,057,972 - ABZR88_RS12405 0.17 -0.4
3,058,068 + ABZR88_RS12405 0.20 -0.4
3,058,149 + ABZR88_RS12405 0.22 -0.0
3,058,350 + ABZR88_RS12405 0.28 -0.6

Or see this region's nucleotide sequence