Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pcnB and folK overlap by 4 nucleotides folK and yadN are separated by 370 nucleotides yadN and yadV are separated by 104 nucleotides yadV and htrE are separated by 34 nucleotides
HEPCGN_08305: pcnB - polynucleotide adenylyltransferase PcnB, at 399,867 to 401,231
pcnB
HEPCGN_08310: folK - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase, at 401,228 to 401,707
folK
HEPCGN_08315: yadN - Uncharacterized fimbrial-like protein YadN, at 402,078 to 402,662
yadN
HEPCGN_08320: yadV - fimbrial chaperone, at 402,767 to 403,507
yadV
HEPCGN_08325: htrE - Yad fimbria usher protein HtrE, at 403,542 to 406,037
htrE
Position (kb) 402
403 Strain fitness (log2 ratio) -2
-1
0
1
2 at 401.183 kb on + strand at 401.674 kb on + strand at 402.043 kb on + strand at 402.167 kb on - strand, within yadN at 402.295 kb on + strand, within yadN at 402.303 kb on - strand, within yadN at 402.425 kb on + strand, within yadN at 402.426 kb on - strand, within yadN at 402.426 kb on - strand, within yadN at 402.435 kb on - strand, within yadN at 402.489 kb on - strand, within yadN at 402.526 kb on - strand, within yadN at 402.528 kb on - strand, within yadN at 402.573 kb on - strand, within yadN at 402.643 kb on - strand at 402.664 kb on + strand at 402.949 kb on - strand, within yadV at 402.983 kb on - strand, within yadV at 402.985 kb on + strand, within yadV at 402.986 kb on - strand, within yadV at 403.022 kb on - strand, within yadV at 403.053 kb on + strand, within yadV at 403.053 kb on + strand, within yadV at 403.059 kb on - strand, within yadV at 403.082 kb on - strand, within yadV at 403.113 kb on + strand, within yadV at 403.190 kb on - strand, within yadV at 403.280 kb on - strand, within yadV at 403.290 kb on + strand, within yadV at 403.291 kb on - strand, within yadV at 403.424 kb on - strand, within yadV at 403.538 kb on + strand at 403.608 kb on + strand at 403.609 kb on - strand at 403.645 kb on - strand at 403.652 kb on + strand at 403.652 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 401,183 + -1.8 401,674 + -2.2 402,043 + -0.2 402,167 - yadN HEPCGN_08315 0.15 -0.5 402,295 + yadN HEPCGN_08315 0.37 -1.0 402,303 - yadN HEPCGN_08315 0.38 -1.1 402,425 + yadN HEPCGN_08315 0.59 -0.4 402,426 - yadN HEPCGN_08315 0.59 -0.2 402,426 - yadN HEPCGN_08315 0.59 -2.1 402,435 - yadN HEPCGN_08315 0.61 -0.5 402,489 - yadN HEPCGN_08315 0.70 -0.8 402,526 - yadN HEPCGN_08315 0.77 -0.7 402,528 - yadN HEPCGN_08315 0.77 -0.4 402,573 - yadN HEPCGN_08315 0.85 -0.9 402,643 - -1.1 402,664 + +0.5 402,949 - yadV HEPCGN_08320 0.25 -1.1 402,983 - yadV HEPCGN_08320 0.29 +0.9 402,985 + yadV HEPCGN_08320 0.29 +0.2 402,986 - yadV HEPCGN_08320 0.30 +2.0 403,022 - yadV HEPCGN_08320 0.34 -0.1 403,053 + yadV HEPCGN_08320 0.39 +0.1 403,053 + yadV HEPCGN_08320 0.39 +1.2 403,059 - yadV HEPCGN_08320 0.39 +0.3 403,082 - yadV HEPCGN_08320 0.43 +0.4 403,113 + yadV HEPCGN_08320 0.47 +0.5 403,190 - yadV HEPCGN_08320 0.57 -0.1 403,280 - yadV HEPCGN_08320 0.69 -0.4 403,290 + yadV HEPCGN_08320 0.71 +0.3 403,291 - yadV HEPCGN_08320 0.71 -0.2 403,424 - yadV HEPCGN_08320 0.89 +1.4 403,538 + -1.3 403,608 + -0.0 403,609 - +0.0 403,645 - -0.6 403,652 + +1.7 403,652 + +0.8
Or see this region's nucleotide sequence