Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hxpB and yniB are separated by 146 nucleotides yniB and yniA are separated by 40 nucleotides yniA and ydiZ are separated by 105 nucleotides ydiZ and pfkB are separated by 100 nucleotides
HEPCGN_05380: hxpB - hexitol phosphatase HxpB, at 951,277 to 951,945
hxpB
HEPCGN_05385: yniB - Uncharacterized protein YniB, at 952,092 to 952,628
yniB
HEPCGN_05390: yniA - putative ketoamine kinase YniA, at 952,669 to 953,529
yniA
HEPCGN_05395: ydiZ - Uncharacterized protein YdiZ, at 953,635 to 953,925
ydiZ
HEPCGN_05400: pfkB - 6-phosphofructokinase II, at 954,026 to 954,955
pfkB
Position (kb) 952
953
954 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 951.719 kb on - strand, within hxpB at 951.722 kb on - strand, within hxpB at 951.790 kb on + strand, within hxpB at 951.891 kb on + strand at 951.892 kb on - strand at 951.895 kb on + strand at 951.895 kb on + strand at 951.895 kb on + strand at 951.946 kb on + strand at 951.946 kb on + strand at 951.968 kb on + strand at 951.968 kb on + strand at 951.968 kb on + strand at 951.968 kb on + strand at 951.969 kb on - strand at 951.979 kb on + strand at 951.982 kb on + strand at 951.983 kb on - strand at 951.994 kb on - strand at 951.994 kb on - strand at 951.994 kb on - strand at 952.008 kb on - strand at 952.008 kb on - strand at 952.042 kb on + strand at 952.046 kb on + strand at 952.046 kb on + strand at 952.046 kb on + strand at 952.052 kb on + strand at 952.058 kb on - strand at 952.172 kb on + strand, within yniB at 952.173 kb on - strand, within yniB at 952.190 kb on + strand, within yniB at 952.229 kb on + strand, within yniB at 952.308 kb on + strand, within yniB at 952.350 kb on - strand, within yniB at 952.517 kb on + strand, within yniB at 952.518 kb on - strand, within yniB at 952.536 kb on - strand, within yniB at 952.536 kb on - strand, within yniB at 952.536 kb on - strand, within yniB at 952.563 kb on + strand, within yniB at 952.564 kb on - strand, within yniB at 952.596 kb on + strand at 952.597 kb on - strand at 952.687 kb on - strand at 952.730 kb on - strand at 952.730 kb on - strand at 952.910 kb on + strand, within yniA at 953.256 kb on - strand, within yniA at 953.256 kb on - strand, within yniA at 953.256 kb on - strand, within yniA at 953.466 kb on + strand at 953.598 kb on - strand at 953.757 kb on + strand, within ydiZ at 953.758 kb on - strand, within ydiZ at 953.791 kb on - strand, within ydiZ at 953.791 kb on - strand, within ydiZ at 953.791 kb on - strand, within ydiZ at 953.840 kb on + strand, within ydiZ at 953.841 kb on - strand, within ydiZ at 953.900 kb on + strand at 953.901 kb on - strand at 953.925 kb on + strand at 953.941 kb on + strand at 954.253 kb on + strand, within pfkB at 954.415 kb on + strand, within pfkB
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 951,719 - hxpB HEPCGN_05380 0.66 +0.7 951,722 - hxpB HEPCGN_05380 0.67 -0.9 951,790 + hxpB HEPCGN_05380 0.77 -0.5 951,891 + -1.0 951,892 - +0.8 951,895 + -1.3 951,895 + -0.3 951,895 + +0.8 951,946 + -0.7 951,946 + -2.3 951,968 + +1.1 951,968 + +0.0 951,968 + -0.5 951,968 + -0.5 951,969 - +0.9 951,979 + -1.1 951,982 + -1.4 951,983 - +1.6 951,994 - -0.2 951,994 - -1.9 951,994 - -0.7 952,008 - -0.1 952,008 - +1.1 952,042 + -1.3 952,046 + -0.6 952,046 + -0.7 952,046 + -0.0 952,052 + +0.1 952,058 - -1.2 952,172 + yniB HEPCGN_05385 0.15 -0.2 952,173 - yniB HEPCGN_05385 0.15 +0.1 952,190 + yniB HEPCGN_05385 0.18 -0.7 952,229 + yniB HEPCGN_05385 0.26 -2.4 952,308 + yniB HEPCGN_05385 0.40 +1.7 952,350 - yniB HEPCGN_05385 0.48 +1.9 952,517 + yniB HEPCGN_05385 0.79 -0.9 952,518 - yniB HEPCGN_05385 0.79 -1.0 952,536 - yniB HEPCGN_05385 0.83 +2.8 952,536 - yniB HEPCGN_05385 0.83 +1.9 952,536 - yniB HEPCGN_05385 0.83 -0.8 952,563 + yniB HEPCGN_05385 0.88 +0.9 952,564 - yniB HEPCGN_05385 0.88 +2.8 952,596 + +1.4 952,597 - -1.4 952,687 - -0.1 952,730 - -0.0 952,730 - +0.2 952,910 + yniA HEPCGN_05390 0.28 +0.2 953,256 - yniA HEPCGN_05390 0.68 -0.2 953,256 - yniA HEPCGN_05390 0.68 -1.3 953,256 - yniA HEPCGN_05390 0.68 -1.6 953,466 + -0.3 953,598 - +0.4 953,757 + ydiZ HEPCGN_05395 0.42 -1.5 953,758 - ydiZ HEPCGN_05395 0.42 -2.1 953,791 - ydiZ HEPCGN_05395 0.54 +1.4 953,791 - ydiZ HEPCGN_05395 0.54 -1.7 953,791 - ydiZ HEPCGN_05395 0.54 +0.2 953,840 + ydiZ HEPCGN_05395 0.70 +1.9 953,841 - ydiZ HEPCGN_05395 0.71 -1.8 953,900 + +0.7 953,901 - +0.8 953,925 + +0.2 953,941 + -0.4 954,253 + pfkB HEPCGN_05400 0.24 +0.0 954,415 + pfkB HEPCGN_05400 0.42 -0.2
Or see this region's nucleotide sequence