Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_04345 and mraW are separated by 17 nucleotides mraW and HEPCGN_04355 are separated by 185 nucleotides
HEPCGN_04345: HEPCGN_04345 - AAA family ATPase, at 762,130 to 763,827
_04345
HEPCGN_04350: mraW - DNA methyltransferase, at 763,845 to 764,690
mraW
HEPCGN_04355: HEPCGN_04355 - replication protein, at 764,876 to 767,701
_04355
Position (kb) 763
764
765 Strain fitness (log2 ratio) -2
-1
0
1
2 at 762.905 kb on + strand, within HEPCGN_04345 at 763.211 kb on - strand, within HEPCGN_04345 at 763.307 kb on + strand, within HEPCGN_04345 at 763.393 kb on + strand, within HEPCGN_04345 at 763.441 kb on + strand, within HEPCGN_04345 at 763.513 kb on - strand, within HEPCGN_04345 at 763.916 kb on + strand at 764.354 kb on + strand, within mraW at 764.578 kb on + strand, within mraW at 764.578 kb on + strand, within mraW at 764.579 kb on - strand, within mraW at 764.643 kb on - strand at 764.719 kb on + strand at 764.773 kb on - strand at 764.776 kb on + strand at 764.816 kb on + strand at 764.828 kb on + strand at 764.828 kb on + strand at 764.828 kb on + strand at 764.829 kb on - strand at 764.829 kb on - strand at 764.829 kb on - strand at 764.855 kb on - strand at 765.159 kb on + strand, within HEPCGN_04355 at 765.312 kb on + strand, within HEPCGN_04355 at 765.312 kb on + strand, within HEPCGN_04355 at 765.313 kb on - strand, within HEPCGN_04355 at 765.404 kb on + strand, within HEPCGN_04355 at 765.405 kb on - strand, within HEPCGN_04355 at 765.405 kb on - strand, within HEPCGN_04355 at 765.416 kb on - strand, within HEPCGN_04355 at 765.649 kb on + strand, within HEPCGN_04355
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 762,905 + HEPCGN_04345 0.46 -0.2 763,211 - HEPCGN_04345 0.64 +1.2 763,307 + HEPCGN_04345 0.69 +2.1 763,393 + HEPCGN_04345 0.74 -0.1 763,441 + HEPCGN_04345 0.77 -0.7 763,513 - HEPCGN_04345 0.81 +0.7 763,916 + -0.1 764,354 + mraW HEPCGN_04350 0.60 +0.2 764,578 + mraW HEPCGN_04350 0.87 -1.5 764,578 + mraW HEPCGN_04350 0.87 -2.0 764,579 - mraW HEPCGN_04350 0.87 -0.7 764,643 - +0.2 764,719 + -0.5 764,773 - -0.3 764,776 + +1.9 764,816 + -0.9 764,828 + +0.2 764,828 + +0.9 764,828 + +1.1 764,829 - -0.5 764,829 - +0.6 764,829 - -0.3 764,855 - +0.7 765,159 + HEPCGN_04355 0.10 -0.6 765,312 + HEPCGN_04355 0.15 +0.5 765,312 + HEPCGN_04355 0.15 -2.2 765,313 - HEPCGN_04355 0.15 +1.0 765,404 + HEPCGN_04355 0.19 +1.4 765,405 - HEPCGN_04355 0.19 +0.4 765,405 - HEPCGN_04355 0.19 -1.1 765,416 - HEPCGN_04355 0.19 +0.3 765,649 + HEPCGN_04355 0.27 +0.5
Or see this region's nucleotide sequence