Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04065

Experiment: Control_ECOR38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliI and fliH overlap by 1 nucleotidesfliH and fliG overlap by 8 nucleotidesfliG and fliF overlap by 8 nucleotides HEPCGN_04060: fliI - flagellum-specific ATP synthase FliI, at 711,426 to 712,799 fliI HEPCGN_04065: fliH - flagellar assembly protein FliH, at 712,799 to 713,485 fliH HEPCGN_04070: fliG - flagellar motor switch protein FliG, at 713,478 to 714,473 fliG HEPCGN_04075: fliF - flagellar M-ring protein FliF, at 714,466 to 716,124 fliF Position (kb) 712 713 714Strain fitness (log2 ratio) -2 -1 0 1at 711.855 kb on - strand, within fliIat 711.917 kb on + strand, within fliIat 712.153 kb on - strand, within fliIat 712.268 kb on + strand, within fliIat 712.344 kb on - strand, within fliIat 712.449 kb on + strand, within fliIat 712.450 kb on - strand, within fliIat 712.517 kb on - strand, within fliIat 712.518 kb on + strand, within fliIat 712.519 kb on - strand, within fliIat 712.519 kb on - strand, within fliIat 712.519 kb on - strand, within fliIat 712.519 kb on - strand, within fliIat 712.605 kb on + strand, within fliIat 712.800 kb on + strandat 712.800 kb on + strandat 712.800 kb on + strandat 712.801 kb on - strandat 712.801 kb on - strandat 712.889 kb on - strand, within fliHat 712.960 kb on + strand, within fliHat 712.960 kb on + strand, within fliHat 713.091 kb on - strand, within fliHat 713.146 kb on + strand, within fliHat 713.164 kb on + strand, within fliHat 713.165 kb on - strand, within fliHat 713.271 kb on + strand, within fliHat 713.320 kb on - strand, within fliHat 713.485 kb on + strandat 713.485 kb on + strandat 713.485 kb on + strandat 713.486 kb on - strandat 713.486 kb on - strandat 713.642 kb on + strand, within fliGat 713.643 kb on - strand, within fliGat 713.829 kb on - strand, within fliGat 714.185 kb on + strand, within fliGat 714.264 kb on - strand, within fliG

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECOR38
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711,855 - fliI HEPCGN_04060 0.31 +0.2
711,917 + fliI HEPCGN_04060 0.36 -0.1
712,153 - fliI HEPCGN_04060 0.53 +0.8
712,268 + fliI HEPCGN_04060 0.61 +0.6
712,344 - fliI HEPCGN_04060 0.67 +0.2
712,449 + fliI HEPCGN_04060 0.74 +0.3
712,450 - fliI HEPCGN_04060 0.75 -1.0
712,517 - fliI HEPCGN_04060 0.79 -1.0
712,518 + fliI HEPCGN_04060 0.79 +0.2
712,519 - fliI HEPCGN_04060 0.80 -1.3
712,519 - fliI HEPCGN_04060 0.80 -1.3
712,519 - fliI HEPCGN_04060 0.80 +0.2
712,519 - fliI HEPCGN_04060 0.80 +0.2
712,605 + fliI HEPCGN_04060 0.86 +0.3
712,800 + -0.2
712,800 + -1.4
712,800 + -1.9
712,801 - +0.1
712,801 - +0.5
712,889 - fliH HEPCGN_04065 0.13 -0.6
712,960 + fliH HEPCGN_04065 0.23 -0.5
712,960 + fliH HEPCGN_04065 0.23 +0.3
713,091 - fliH HEPCGN_04065 0.43 +0.1
713,146 + fliH HEPCGN_04065 0.51 +0.3
713,164 + fliH HEPCGN_04065 0.53 -1.7
713,165 - fliH HEPCGN_04065 0.53 -1.1
713,271 + fliH HEPCGN_04065 0.69 -0.6
713,320 - fliH HEPCGN_04065 0.76 +1.1
713,485 + -0.0
713,485 + +1.5
713,485 + +0.4
713,486 - -0.3
713,486 - +0.4
713,642 + fliG HEPCGN_04070 0.16 +0.3
713,643 - fliG HEPCGN_04070 0.17 -1.0
713,829 - fliG HEPCGN_04070 0.35 +0.6
714,185 + fliG HEPCGN_04070 0.71 +0.1
714,264 - fliG HEPCGN_04070 0.79 -0.7

Or see this region's nucleotide sequence