Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yegQ and HEPCGN_02850 are separated by 102 nucleotides HEPCGN_02850 and HEPCGN_02855 are separated by 1 nucleotides HEPCGN_02855 and yegP are separated by 253 nucleotides yegP and baeR are separated by 190 nucleotides
HEPCGN_02845: yegQ - tRNA 5-hydroxyuridine modification protein YegQ, at 477,716 to 479,077
yegQ
HEPCGN_02850: HEPCGN_02850 - type II toxin-antitoxin system RelE/ParE family toxin, at 479,180 to 479,476
_02850
HEPCGN_02855: HEPCGN_02855 - type II toxin-antitoxin system ParD family antitoxin, at 479,478 to 479,729
_02855
HEPCGN_02860: yegP - UPF0339 protein YegP, at 479,983 to 480,315
yegP
HEPCGN_02865: baeR - two-component system response regulator BaeR, at 480,506 to 481,228
baeR
Position (kb) 479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 478.533 kb on + strand, within yegQ at 478.560 kb on + strand, within yegQ at 478.560 kb on + strand, within yegQ at 478.795 kb on + strand, within yegQ at 479.013 kb on + strand at 479.077 kb on + strand at 479.077 kb on + strand at 479.192 kb on + strand at 479.326 kb on + strand, within HEPCGN_02850 at 479.330 kb on + strand, within HEPCGN_02850 at 479.331 kb on - strand, within HEPCGN_02850 at 479.331 kb on - strand, within HEPCGN_02850 at 479.379 kb on + strand, within HEPCGN_02850 at 479.418 kb on + strand, within HEPCGN_02850 at 479.466 kb on - strand at 479.467 kb on + strand at 479.470 kb on + strand at 479.471 kb on - strand at 479.509 kb on - strand, within HEPCGN_02855 at 479.748 kb on + strand at 479.768 kb on - strand at 479.817 kb on + strand at 479.841 kb on + strand at 479.842 kb on - strand at 479.988 kb on + strand at 479.989 kb on - strand at 480.150 kb on - strand, within yegP at 480.175 kb on - strand, within yegP at 480.175 kb on - strand, within yegP at 480.175 kb on - strand, within yegP at 480.179 kb on - strand, within yegP at 480.218 kb on + strand, within yegP at 480.219 kb on - strand, within yegP at 480.237 kb on + strand, within yegP at 480.238 kb on - strand, within yegP at 480.279 kb on + strand, within yegP at 480.291 kb on + strand at 480.356 kb on + strand at 480.356 kb on + strand at 480.641 kb on + strand, within baeR at 480.660 kb on + strand, within baeR at 480.661 kb on - strand, within baeR
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 478,533 + yegQ HEPCGN_02845 0.60 +0.3 478,560 + yegQ HEPCGN_02845 0.62 -0.7 478,560 + yegQ HEPCGN_02845 0.62 +0.2 478,795 + yegQ HEPCGN_02845 0.79 +0.5 479,013 + -0.4 479,077 + +0.4 479,077 + -0.0 479,192 + +0.4 479,326 + HEPCGN_02850 0.49 -1.6 479,330 + HEPCGN_02850 0.51 +0.6 479,331 - HEPCGN_02850 0.51 -2.8 479,331 - HEPCGN_02850 0.51 +1.3 479,379 + HEPCGN_02850 0.67 -0.7 479,418 + HEPCGN_02850 0.80 +0.4 479,466 - +2.8 479,467 + +0.8 479,470 + +0.4 479,471 - -0.2 479,509 - HEPCGN_02855 0.12 -1.1 479,748 + -2.3 479,768 - -1.0 479,817 + -0.4 479,841 + -1.0 479,842 - +0.2 479,988 + +0.5 479,989 - -0.6 480,150 - yegP HEPCGN_02860 0.50 +0.1 480,175 - yegP HEPCGN_02860 0.58 -1.8 480,175 - yegP HEPCGN_02860 0.58 +0.0 480,175 - yegP HEPCGN_02860 0.58 +0.0 480,179 - yegP HEPCGN_02860 0.59 +0.1 480,218 + yegP HEPCGN_02860 0.71 -0.1 480,219 - yegP HEPCGN_02860 0.71 +1.2 480,237 + yegP HEPCGN_02860 0.76 -2.0 480,238 - yegP HEPCGN_02860 0.77 -0.9 480,279 + yegP HEPCGN_02860 0.89 -0.3 480,291 + +1.1 480,356 + +0.6 480,356 + -0.2 480,641 + baeR HEPCGN_02865 0.19 -0.0 480,660 + baeR HEPCGN_02865 0.21 +0.2 480,661 - baeR HEPCGN_02865 0.21 -1.4
Or see this region's nucleotide sequence