Experiment: Control_ECOR38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_01240 and HEPCGN_01245 are separated by 11 nucleotides HEPCGN_01245 and HEPCGN_01250 are separated by 14 nucleotides HEPCGN_01250 and HEPCGN_01255 overlap by 1 nucleotides
HEPCGN_01240: HEPCGN_01240 - alcohol dehydrogenase, at 174,527 to 175,540
_01240
HEPCGN_01245: HEPCGN_01245 - 3-oxoacyl-ACP reductase, at 175,552 to 176,307
_01245
HEPCGN_01250: HEPCGN_01250 - hydrolase, at 176,322 to 176,633
_01250
HEPCGN_01255: HEPCGN_01255 - hydrolase, at 176,633 to 177,829
_01255
Position (kb) 176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 175.638 kb on - strand, within HEPCGN_01245 at 175.638 kb on - strand, within HEPCGN_01245 at 175.933 kb on - strand, within HEPCGN_01245 at 176.033 kb on - strand, within HEPCGN_01245 at 176.212 kb on - strand, within HEPCGN_01245 at 176.322 kb on - strand at 176.432 kb on + strand, within HEPCGN_01250 at 176.442 kb on - strand, within HEPCGN_01250 at 176.499 kb on + strand, within HEPCGN_01250 at 176.562 kb on - strand, within HEPCGN_01250 at 176.642 kb on + strand at 176.642 kb on + strand at 176.675 kb on - strand at 176.675 kb on - strand at 176.675 kb on - strand at 176.688 kb on + strand at 176.696 kb on - strand at 176.796 kb on - strand, within HEPCGN_01255 at 176.830 kb on + strand, within HEPCGN_01255 at 176.838 kb on + strand, within HEPCGN_01255 at 176.838 kb on + strand, within HEPCGN_01255 at 176.838 kb on + strand, within HEPCGN_01255 at 176.838 kb on + strand, within HEPCGN_01255 at 176.980 kb on + strand, within HEPCGN_01255 at 177.020 kb on - strand, within HEPCGN_01255 at 177.020 kb on - strand, within HEPCGN_01255 at 177.062 kb on - strand, within HEPCGN_01255 at 177.115 kb on - strand, within HEPCGN_01255 at 177.199 kb on + strand, within HEPCGN_01255 at 177.199 kb on + strand, within HEPCGN_01255 at 177.200 kb on - strand, within HEPCGN_01255 at 177.273 kb on - strand, within HEPCGN_01255 at 177.308 kb on - strand, within HEPCGN_01255 at 177.357 kb on - strand, within HEPCGN_01255 at 177.359 kb on - strand, within HEPCGN_01255 at 177.534 kb on + strand, within HEPCGN_01255 at 177.621 kb on + strand, within HEPCGN_01255
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECOR38 remove 175,638 - HEPCGN_01245 0.11 +1.4 175,638 - HEPCGN_01245 0.11 +0.4 175,933 - HEPCGN_01245 0.50 -0.2 176,033 - HEPCGN_01245 0.64 -0.5 176,212 - HEPCGN_01245 0.87 -0.2 176,322 - -0.9 176,432 + HEPCGN_01250 0.35 -2.2 176,442 - HEPCGN_01250 0.38 -1.0 176,499 + HEPCGN_01250 0.57 -1.5 176,562 - HEPCGN_01250 0.77 +0.0 176,642 + +1.5 176,642 + +0.1 176,675 - -0.6 176,675 - -2.0 176,675 - +1.2 176,688 + +0.1 176,696 - -1.3 176,796 - HEPCGN_01255 0.14 -0.6 176,830 + HEPCGN_01255 0.16 -0.6 176,838 + HEPCGN_01255 0.17 +0.6 176,838 + HEPCGN_01255 0.17 +0.3 176,838 + HEPCGN_01255 0.17 +0.1 176,838 + HEPCGN_01255 0.17 -0.0 176,980 + HEPCGN_01255 0.29 +0.4 177,020 - HEPCGN_01255 0.32 -2.9 177,020 - HEPCGN_01255 0.32 -0.1 177,062 - HEPCGN_01255 0.36 +0.7 177,115 - HEPCGN_01255 0.40 +0.2 177,199 + HEPCGN_01255 0.47 -1.0 177,199 + HEPCGN_01255 0.47 -0.6 177,200 - HEPCGN_01255 0.47 -1.6 177,273 - HEPCGN_01255 0.53 +0.9 177,308 - HEPCGN_01255 0.56 -0.7 177,357 - HEPCGN_01255 0.60 -2.6 177,359 - HEPCGN_01255 0.61 -0.0 177,534 + HEPCGN_01255 0.75 +0.1 177,621 + HEPCGN_01255 0.83 +0.0
Or see this region's nucleotide sequence