Experiment: R2A 15C; 144 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS20580 and ABZR88_RS20585 are separated by 84 nucleotides ABZR88_RS20585 and ABZR88_RS20590 are separated by 242 nucleotides
ABZR88_RS20580: ABZR88_RS20580 - proline iminopeptidase-family hydrolase, at 4,983,010 to 4,984,029
_RS20580
ABZR88_RS20585: ABZR88_RS20585 - TetR/AcrR family transcriptional regulator, at 4,984,114 to 4,984,683
_RS20585
ABZR88_RS20590: ABZR88_RS20590 - MlaD family protein, at 4,984,926 to 4,985,684
_RS20590
Position (kb)
4984
4985 Strain fitness (log2 ratio)
-1
0
1 at 4983.238 kb on + strand, within ABZR88_RS20580 at 4983.239 kb on - strand, within ABZR88_RS20580 at 4983.293 kb on - strand, within ABZR88_RS20580 at 4983.328 kb on - strand, within ABZR88_RS20580 at 4983.362 kb on + strand, within ABZR88_RS20580 at 4983.409 kb on + strand, within ABZR88_RS20580 at 4983.498 kb on + strand, within ABZR88_RS20580 at 4983.525 kb on - strand, within ABZR88_RS20580 at 4983.701 kb on + strand, within ABZR88_RS20580 at 4983.702 kb on - strand, within ABZR88_RS20580 at 4983.826 kb on - strand, within ABZR88_RS20580 at 4983.847 kb on + strand, within ABZR88_RS20580 at 4983.911 kb on - strand, within ABZR88_RS20580 at 4983.934 kb on - strand at 4983.995 kb on + strand at 4983.996 kb on - strand at 4984.125 kb on - strand at 4984.241 kb on - strand, within ABZR88_RS20585 at 4984.388 kb on + strand, within ABZR88_RS20585 at 4984.531 kb on + strand, within ABZR88_RS20585 at 4984.684 kb on + strand at 4984.685 kb on - strand at 4984.769 kb on - strand at 4984.901 kb on - strand at 4984.920 kb on + strand at 4984.921 kb on - strand at 4984.927 kb on + strand at 4985.117 kb on + strand, within ABZR88_RS20590 at 4985.117 kb on + strand, within ABZR88_RS20590 at 4985.313 kb on + strand, within ABZR88_RS20590 at 4985.407 kb on - strand, within ABZR88_RS20590 at 4985.472 kb on - strand, within ABZR88_RS20590 at 4985.474 kb on + strand, within ABZR88_RS20590 at 4985.475 kb on - strand, within ABZR88_RS20590 at 4985.475 kb on - strand, within ABZR88_RS20590 at 4985.516 kb on + strand, within ABZR88_RS20590 at 4985.558 kb on - strand, within ABZR88_RS20590 at 4985.598 kb on + strand, within ABZR88_RS20590 at 4985.641 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 15C; 144 hours remove 4,983,238 + ABZR88_RS20580 0.22 -1.0 4,983,239 - ABZR88_RS20580 0.22 -0.2 4,983,293 - ABZR88_RS20580 0.28 +0.2 4,983,328 - ABZR88_RS20580 0.31 -0.1 4,983,362 + ABZR88_RS20580 0.35 -0.2 4,983,409 + ABZR88_RS20580 0.39 -0.6 4,983,498 + ABZR88_RS20580 0.48 -0.3 4,983,525 - ABZR88_RS20580 0.50 +0.6 4,983,701 + ABZR88_RS20580 0.68 +0.1 4,983,702 - ABZR88_RS20580 0.68 -0.1 4,983,826 - ABZR88_RS20580 0.80 -0.4 4,983,847 + ABZR88_RS20580 0.82 -0.3 4,983,911 - ABZR88_RS20580 0.88 +0.6 4,983,934 - +0.3 4,983,995 + -1.1 4,983,996 - -0.8 4,984,125 - +0.4 4,984,241 - ABZR88_RS20585 0.22 -1.1 4,984,388 + ABZR88_RS20585 0.48 -0.8 4,984,531 + ABZR88_RS20585 0.73 -0.4 4,984,684 + -0.1 4,984,685 - -0.2 4,984,769 - +0.6 4,984,901 - -0.9 4,984,920 + -0.8 4,984,921 - -0.0 4,984,927 + +0.2 4,985,117 + ABZR88_RS20590 0.25 +0.7 4,985,117 + ABZR88_RS20590 0.25 +0.1 4,985,313 + ABZR88_RS20590 0.51 -0.4 4,985,407 - ABZR88_RS20590 0.63 +0.7 4,985,472 - ABZR88_RS20590 0.72 -0.9 4,985,474 + ABZR88_RS20590 0.72 +0.9 4,985,475 - ABZR88_RS20590 0.72 -0.2 4,985,475 - ABZR88_RS20590 0.72 +0.2 4,985,516 + ABZR88_RS20590 0.78 +0.4 4,985,558 - ABZR88_RS20590 0.83 -0.6 4,985,598 + ABZR88_RS20590 0.89 +0.3 4,985,641 - -0.3
Or see this region's nucleotide sequence