Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS17620

Experiment: R2A 15C; 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS17615 and ABZR88_RS17620 are separated by 680 nucleotidesABZR88_RS17620 and ABZR88_RS17625 are separated by 15 nucleotidesABZR88_RS17625 and ABZR88_RS17630 overlap by 1 nucleotides ABZR88_RS17615: ABZR88_RS17615 - glycosyltransferase family 2 protein, at 4,308,349 to 4,309,164 _RS17615 ABZR88_RS17620: ABZR88_RS17620 - glycosyltransferase, at 4,309,845 to 4,311,041 _RS17620 ABZR88_RS17625: ABZR88_RS17625 - hypothetical protein, at 4,311,057 to 4,311,719 _RS17625 ABZR88_RS17630: ABZR88_RS17630 - glycosyltransferase family 9 protein, at 4,311,719 to 4,312,837 _RS17630 Position (kb) 4309 4310 4311 4312Strain fitness (log2 ratio) -3 -2 -1 0 1at 4308.854 kb on + strand, within ABZR88_RS17615at 4308.932 kb on + strand, within ABZR88_RS17615at 4308.932 kb on + strand, within ABZR88_RS17615at 4309.084 kb on - strandat 4309.109 kb on - strandat 4309.324 kb on + strandat 4309.341 kb on + strandat 4309.418 kb on - strandat 4309.446 kb on + strandat 4309.522 kb on - strandat 4309.525 kb on + strandat 4309.526 kb on - strandat 4309.537 kb on + strandat 4309.693 kb on - strandat 4309.729 kb on - strandat 4309.739 kb on - strandat 4309.772 kb on + strandat 4309.784 kb on - strandat 4309.853 kb on + strandat 4309.862 kb on + strandat 4309.883 kb on + strandat 4309.977 kb on + strand, within ABZR88_RS17620at 4310.060 kb on + strand, within ABZR88_RS17620at 4310.130 kb on + strand, within ABZR88_RS17620at 4310.131 kb on - strand, within ABZR88_RS17620at 4310.131 kb on - strand, within ABZR88_RS17620at 4310.441 kb on + strand, within ABZR88_RS17620at 4310.497 kb on + strand, within ABZR88_RS17620at 4310.673 kb on + strand, within ABZR88_RS17620at 4310.677 kb on + strand, within ABZR88_RS17620at 4310.678 kb on - strand, within ABZR88_RS17620at 4310.694 kb on - strand, within ABZR88_RS17620at 4310.715 kb on + strand, within ABZR88_RS17620at 4310.716 kb on - strand, within ABZR88_RS17620at 4310.875 kb on + strand, within ABZR88_RS17620at 4310.876 kb on - strand, within ABZR88_RS17620at 4310.928 kb on + strandat 4310.981 kb on + strandat 4311.106 kb on - strandat 4311.295 kb on - strand, within ABZR88_RS17625at 4311.347 kb on + strand, within ABZR88_RS17625at 4311.374 kb on + strand, within ABZR88_RS17625at 4311.391 kb on + strand, within ABZR88_RS17625at 4311.528 kb on - strand, within ABZR88_RS17625at 4311.597 kb on - strand, within ABZR88_RS17625at 4311.639 kb on + strand, within ABZR88_RS17625at 4311.811 kb on + strandat 4311.846 kb on - strand, within ABZR88_RS17630at 4311.896 kb on - strand, within ABZR88_RS17630

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 15C; 72 hours
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4,308,854 + ABZR88_RS17615 0.62 -0.9
4,308,932 + ABZR88_RS17615 0.71 -1.7
4,308,932 + ABZR88_RS17615 0.71 -0.9
4,309,084 - -1.2
4,309,109 - -1.8
4,309,324 + -1.3
4,309,341 + -2.9
4,309,418 - -0.5
4,309,446 + -1.5
4,309,522 - -0.7
4,309,525 + -1.5
4,309,526 - -0.9
4,309,537 + -1.5
4,309,693 - -1.5
4,309,729 - +0.1
4,309,739 - -0.5
4,309,772 + +0.2
4,309,784 - +0.4
4,309,853 + +0.3
4,309,862 + -0.0
4,309,883 + +0.1
4,309,977 + ABZR88_RS17620 0.11 -1.0
4,310,060 + ABZR88_RS17620 0.18 -0.9
4,310,130 + ABZR88_RS17620 0.24 -0.6
4,310,131 - ABZR88_RS17620 0.24 -0.9
4,310,131 - ABZR88_RS17620 0.24 -2.1
4,310,441 + ABZR88_RS17620 0.50 +0.1
4,310,497 + ABZR88_RS17620 0.54 -0.4
4,310,673 + ABZR88_RS17620 0.69 -0.5
4,310,677 + ABZR88_RS17620 0.70 -0.4
4,310,678 - ABZR88_RS17620 0.70 -2.3
4,310,694 - ABZR88_RS17620 0.71 -2.5
4,310,715 + ABZR88_RS17620 0.73 -0.9
4,310,716 - ABZR88_RS17620 0.73 -1.1
4,310,875 + ABZR88_RS17620 0.86 -0.8
4,310,876 - ABZR88_RS17620 0.86 -0.2
4,310,928 + -1.2
4,310,981 + -0.7
4,311,106 - -1.2
4,311,295 - ABZR88_RS17625 0.36 -1.7
4,311,347 + ABZR88_RS17625 0.44 -0.9
4,311,374 + ABZR88_RS17625 0.48 -0.3
4,311,391 + ABZR88_RS17625 0.50 -1.1
4,311,528 - ABZR88_RS17625 0.71 -0.5
4,311,597 - ABZR88_RS17625 0.81 -1.5
4,311,639 + ABZR88_RS17625 0.88 -1.4
4,311,811 + -0.9
4,311,846 - ABZR88_RS17630 0.11 -1.6
4,311,896 - ABZR88_RS17630 0.16 -0.7

Or see this region's nucleotide sequence