Experiment: R2A 15C; 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS17615 and ABZR88_RS17620 are separated by 680 nucleotides ABZR88_RS17620 and ABZR88_RS17625 are separated by 15 nucleotides ABZR88_RS17625 and ABZR88_RS17630 overlap by 1 nucleotides
ABZR88_RS17615: ABZR88_RS17615 - glycosyltransferase family 2 protein, at 4,308,349 to 4,309,164
_RS17615
ABZR88_RS17620: ABZR88_RS17620 - glycosyltransferase, at 4,309,845 to 4,311,041
_RS17620
ABZR88_RS17625: ABZR88_RS17625 - hypothetical protein, at 4,311,057 to 4,311,719
_RS17625
ABZR88_RS17630: ABZR88_RS17630 - glycosyltransferase family 9 protein, at 4,311,719 to 4,312,837
_RS17630
Position (kb)
4309
4310
4311
4312 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4308.854 kb on + strand, within ABZR88_RS17615 at 4308.932 kb on + strand, within ABZR88_RS17615 at 4308.932 kb on + strand, within ABZR88_RS17615 at 4309.084 kb on - strand at 4309.109 kb on - strand at 4309.324 kb on + strand at 4309.341 kb on + strand at 4309.418 kb on - strand at 4309.446 kb on + strand at 4309.522 kb on - strand at 4309.525 kb on + strand at 4309.526 kb on - strand at 4309.537 kb on + strand at 4309.693 kb on - strand at 4309.729 kb on - strand at 4309.739 kb on - strand at 4309.772 kb on + strand at 4309.784 kb on - strand at 4309.853 kb on + strand at 4309.862 kb on + strand at 4309.883 kb on + strand at 4309.977 kb on + strand, within ABZR88_RS17620 at 4310.060 kb on + strand, within ABZR88_RS17620 at 4310.130 kb on + strand, within ABZR88_RS17620 at 4310.131 kb on - strand, within ABZR88_RS17620 at 4310.131 kb on - strand, within ABZR88_RS17620 at 4310.441 kb on + strand, within ABZR88_RS17620 at 4310.497 kb on + strand, within ABZR88_RS17620 at 4310.673 kb on + strand, within ABZR88_RS17620 at 4310.677 kb on + strand, within ABZR88_RS17620 at 4310.678 kb on - strand, within ABZR88_RS17620 at 4310.694 kb on - strand, within ABZR88_RS17620 at 4310.715 kb on + strand, within ABZR88_RS17620 at 4310.716 kb on - strand, within ABZR88_RS17620 at 4310.875 kb on + strand, within ABZR88_RS17620 at 4310.876 kb on - strand, within ABZR88_RS17620 at 4310.928 kb on + strand at 4310.981 kb on + strand at 4311.106 kb on - strand at 4311.295 kb on - strand, within ABZR88_RS17625 at 4311.347 kb on + strand, within ABZR88_RS17625 at 4311.374 kb on + strand, within ABZR88_RS17625 at 4311.391 kb on + strand, within ABZR88_RS17625 at 4311.528 kb on - strand, within ABZR88_RS17625 at 4311.597 kb on - strand, within ABZR88_RS17625 at 4311.639 kb on + strand, within ABZR88_RS17625 at 4311.811 kb on + strand at 4311.846 kb on - strand, within ABZR88_RS17630 at 4311.896 kb on - strand, within ABZR88_RS17630
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 15C; 72 hours remove 4,308,854 + ABZR88_RS17615 0.62 -0.9 4,308,932 + ABZR88_RS17615 0.71 -1.7 4,308,932 + ABZR88_RS17615 0.71 -0.9 4,309,084 - -1.2 4,309,109 - -1.8 4,309,324 + -1.3 4,309,341 + -2.9 4,309,418 - -0.5 4,309,446 + -1.5 4,309,522 - -0.7 4,309,525 + -1.5 4,309,526 - -0.9 4,309,537 + -1.5 4,309,693 - -1.5 4,309,729 - +0.1 4,309,739 - -0.5 4,309,772 + +0.2 4,309,784 - +0.4 4,309,853 + +0.3 4,309,862 + -0.0 4,309,883 + +0.1 4,309,977 + ABZR88_RS17620 0.11 -1.0 4,310,060 + ABZR88_RS17620 0.18 -0.9 4,310,130 + ABZR88_RS17620 0.24 -0.6 4,310,131 - ABZR88_RS17620 0.24 -0.9 4,310,131 - ABZR88_RS17620 0.24 -2.1 4,310,441 + ABZR88_RS17620 0.50 +0.1 4,310,497 + ABZR88_RS17620 0.54 -0.4 4,310,673 + ABZR88_RS17620 0.69 -0.5 4,310,677 + ABZR88_RS17620 0.70 -0.4 4,310,678 - ABZR88_RS17620 0.70 -2.3 4,310,694 - ABZR88_RS17620 0.71 -2.5 4,310,715 + ABZR88_RS17620 0.73 -0.9 4,310,716 - ABZR88_RS17620 0.73 -1.1 4,310,875 + ABZR88_RS17620 0.86 -0.8 4,310,876 - ABZR88_RS17620 0.86 -0.2 4,310,928 + -1.2 4,310,981 + -0.7 4,311,106 - -1.2 4,311,295 - ABZR88_RS17625 0.36 -1.7 4,311,347 + ABZR88_RS17625 0.44 -0.9 4,311,374 + ABZR88_RS17625 0.48 -0.3 4,311,391 + ABZR88_RS17625 0.50 -1.1 4,311,528 - ABZR88_RS17625 0.71 -0.5 4,311,597 - ABZR88_RS17625 0.81 -1.5 4,311,639 + ABZR88_RS17625 0.88 -1.4 4,311,811 + -0.9 4,311,846 - ABZR88_RS17630 0.11 -1.6 4,311,896 - ABZR88_RS17630 0.16 -0.7
Or see this region's nucleotide sequence