Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS15470

Experiment: R2A 15C; 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS15460 and ABZR88_RS15465 are separated by 69 nucleotidesABZR88_RS15465 and ABZR88_RS15470 are separated by 245 nucleotidesABZR88_RS15470 and ABZR88_RS15475 are separated by 257 nucleotidesABZR88_RS15475 and ABZR88_RS15480 are separated by 156 nucleotides ABZR88_RS15460: ABZR88_RS15460 - YpdA family putative bacillithiol disulfide reductase, at 3,826,825 to 3,827,781 _RS15460 ABZR88_RS15465: ABZR88_RS15465 - response regulator, at 3,827,851 to 3,828,219 _RS15465 ABZR88_RS15470: ABZR88_RS15470 - response regulator transcription factor, at 3,828,465 to 3,828,830 _RS15470 ABZR88_RS15475: ABZR88_RS15475 - helix-turn-helix domain-containing protein, at 3,829,088 to 3,829,339 _RS15475 ABZR88_RS15480: ABZR88_RS15480 - enoyl-CoA hydratase/isomerase family protein, at 3,829,496 to 3,830,272 _RS15480 Position (kb) 3828 3829Strain fitness (log2 ratio) -1 0 1at 3827.486 kb on + strand, within ABZR88_RS15460at 3827.506 kb on - strand, within ABZR88_RS15460at 3827.528 kb on + strand, within ABZR88_RS15460at 3827.771 kb on + strandat 3827.779 kb on + strandat 3827.822 kb on - strandat 3827.872 kb on - strandat 3828.047 kb on + strand, within ABZR88_RS15465at 3828.138 kb on + strand, within ABZR88_RS15465at 3828.138 kb on + strand, within ABZR88_RS15465at 3828.180 kb on + strand, within ABZR88_RS15465at 3828.339 kb on - strandat 3828.339 kb on - strandat 3828.587 kb on + strand, within ABZR88_RS15470at 3828.662 kb on + strand, within ABZR88_RS15470at 3828.745 kb on + strand, within ABZR88_RS15470at 3828.890 kb on + strandat 3828.957 kb on - strandat 3829.365 kb on + strandat 3829.366 kb on - strandat 3829.437 kb on + strandat 3829.546 kb on + strandat 3829.553 kb on - strandat 3829.789 kb on + strand, within ABZR88_RS15480at 3829.789 kb on + strand, within ABZR88_RS15480at 3829.819 kb on - strand, within ABZR88_RS15480

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 15C; 72 hours
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3,827,486 + ABZR88_RS15460 0.69 +0.3
3,827,506 - ABZR88_RS15460 0.71 -0.8
3,827,528 + ABZR88_RS15460 0.73 -0.6
3,827,771 + -0.2
3,827,779 + -0.2
3,827,822 - +0.6
3,827,872 - +1.7
3,828,047 + ABZR88_RS15465 0.53 +0.5
3,828,138 + ABZR88_RS15465 0.78 -0.2
3,828,138 + ABZR88_RS15465 0.78 -0.0
3,828,180 + ABZR88_RS15465 0.89 -0.2
3,828,339 - +1.2
3,828,339 - +0.7
3,828,587 + ABZR88_RS15470 0.33 +0.0
3,828,662 + ABZR88_RS15470 0.54 +0.5
3,828,745 + ABZR88_RS15470 0.77 -0.3
3,828,890 + -0.2
3,828,957 - +0.2
3,829,365 + +0.2
3,829,366 - +0.7
3,829,437 + -1.0
3,829,546 + -1.6
3,829,553 - +0.9
3,829,789 + ABZR88_RS15480 0.38 -1.6
3,829,789 + ABZR88_RS15480 0.38 -1.2
3,829,819 - ABZR88_RS15480 0.42 -1.4

Or see this region's nucleotide sequence