Experiment: R2A 15C; 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS15460 and ABZR88_RS15465 are separated by 69 nucleotides ABZR88_RS15465 and ABZR88_RS15470 are separated by 245 nucleotides ABZR88_RS15470 and ABZR88_RS15475 are separated by 257 nucleotides ABZR88_RS15475 and ABZR88_RS15480 are separated by 156 nucleotides
ABZR88_RS15460: ABZR88_RS15460 - YpdA family putative bacillithiol disulfide reductase, at 3,826,825 to 3,827,781
_RS15460
ABZR88_RS15465: ABZR88_RS15465 - response regulator, at 3,827,851 to 3,828,219
_RS15465
ABZR88_RS15470: ABZR88_RS15470 - response regulator transcription factor, at 3,828,465 to 3,828,830
_RS15470
ABZR88_RS15475: ABZR88_RS15475 - helix-turn-helix domain-containing protein, at 3,829,088 to 3,829,339
_RS15475
ABZR88_RS15480: ABZR88_RS15480 - enoyl-CoA hydratase/isomerase family protein, at 3,829,496 to 3,830,272
_RS15480
Position (kb)
3828
3829 Strain fitness (log2 ratio)
-1
0
1 at 3827.486 kb on + strand, within ABZR88_RS15460 at 3827.506 kb on - strand, within ABZR88_RS15460 at 3827.528 kb on + strand, within ABZR88_RS15460 at 3827.771 kb on + strand at 3827.779 kb on + strand at 3827.822 kb on - strand at 3827.872 kb on - strand at 3828.047 kb on + strand, within ABZR88_RS15465 at 3828.138 kb on + strand, within ABZR88_RS15465 at 3828.138 kb on + strand, within ABZR88_RS15465 at 3828.180 kb on + strand, within ABZR88_RS15465 at 3828.339 kb on - strand at 3828.339 kb on - strand at 3828.587 kb on + strand, within ABZR88_RS15470 at 3828.662 kb on + strand, within ABZR88_RS15470 at 3828.745 kb on + strand, within ABZR88_RS15470 at 3828.890 kb on + strand at 3828.957 kb on - strand at 3829.365 kb on + strand at 3829.366 kb on - strand at 3829.437 kb on + strand at 3829.546 kb on + strand at 3829.553 kb on - strand at 3829.789 kb on + strand, within ABZR88_RS15480 at 3829.789 kb on + strand, within ABZR88_RS15480 at 3829.819 kb on - strand, within ABZR88_RS15480
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 15C; 72 hours remove 3,827,486 + ABZR88_RS15460 0.69 +0.3 3,827,506 - ABZR88_RS15460 0.71 -0.8 3,827,528 + ABZR88_RS15460 0.73 -0.6 3,827,771 + -0.2 3,827,779 + -0.2 3,827,822 - +0.6 3,827,872 - +1.7 3,828,047 + ABZR88_RS15465 0.53 +0.5 3,828,138 + ABZR88_RS15465 0.78 -0.2 3,828,138 + ABZR88_RS15465 0.78 -0.0 3,828,180 + ABZR88_RS15465 0.89 -0.2 3,828,339 - +1.2 3,828,339 - +0.7 3,828,587 + ABZR88_RS15470 0.33 +0.0 3,828,662 + ABZR88_RS15470 0.54 +0.5 3,828,745 + ABZR88_RS15470 0.77 -0.3 3,828,890 + -0.2 3,828,957 - +0.2 3,829,365 + +0.2 3,829,366 - +0.7 3,829,437 + -1.0 3,829,546 + -1.6 3,829,553 - +0.9 3,829,789 + ABZR88_RS15480 0.38 -1.6 3,829,789 + ABZR88_RS15480 0.38 -1.2 3,829,819 - ABZR88_RS15480 0.42 -1.4
Or see this region's nucleotide sequence