Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS08235

Experiment: R2A 15C; 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS08235 and ABZR88_RS08240 are separated by 19 nucleotides ABZR88_RS08235: ABZR88_RS08235 - SusC/RagA family TonB-linked outer membrane protein, at 2,050,089 to 2,053,325 _RS08235 ABZR88_RS08240: ABZR88_RS08240 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 2,053,345 to 2,054,817 _RS08240 Position (kb) 2050 2051 2052 2053 2054Strain fitness (log2 ratio) -1 0 1at 2049.214 kb on + strandat 2049.356 kb on - strandat 2049.384 kb on + strandat 2049.444 kb on + strandat 2049.626 kb on - strandat 2049.628 kb on + strandat 2049.767 kb on + strandat 2049.950 kb on + strandat 2049.951 kb on - strandat 2049.957 kb on + strandat 2050.127 kb on + strandat 2050.140 kb on - strandat 2050.284 kb on - strandat 2050.325 kb on + strandat 2050.495 kb on + strand, within ABZR88_RS08235at 2050.495 kb on + strand, within ABZR88_RS08235at 2050.499 kb on + strand, within ABZR88_RS08235at 2050.499 kb on + strand, within ABZR88_RS08235at 2050.538 kb on + strand, within ABZR88_RS08235at 2050.544 kb on - strand, within ABZR88_RS08235at 2050.788 kb on - strand, within ABZR88_RS08235at 2050.818 kb on + strand, within ABZR88_RS08235at 2050.979 kb on - strand, within ABZR88_RS08235at 2050.989 kb on + strand, within ABZR88_RS08235at 2050.990 kb on - strand, within ABZR88_RS08235at 2051.253 kb on + strand, within ABZR88_RS08235at 2051.279 kb on + strand, within ABZR88_RS08235at 2051.279 kb on + strand, within ABZR88_RS08235at 2051.303 kb on - strand, within ABZR88_RS08235at 2051.442 kb on + strand, within ABZR88_RS08235at 2051.634 kb on + strand, within ABZR88_RS08235at 2051.654 kb on - strand, within ABZR88_RS08235at 2051.688 kb on - strand, within ABZR88_RS08235at 2051.726 kb on - strand, within ABZR88_RS08235at 2051.735 kb on + strand, within ABZR88_RS08235at 2051.762 kb on + strand, within ABZR88_RS08235at 2051.900 kb on + strand, within ABZR88_RS08235at 2051.979 kb on + strand, within ABZR88_RS08235at 2052.225 kb on - strand, within ABZR88_RS08235at 2052.372 kb on + strand, within ABZR88_RS08235at 2052.648 kb on + strand, within ABZR88_RS08235at 2052.652 kb on - strand, within ABZR88_RS08235at 2052.784 kb on - strand, within ABZR88_RS08235at 2052.786 kb on - strand, within ABZR88_RS08235at 2052.821 kb on + strand, within ABZR88_RS08235at 2052.877 kb on - strand, within ABZR88_RS08235at 2052.885 kb on + strand, within ABZR88_RS08235at 2052.886 kb on - strand, within ABZR88_RS08235at 2052.970 kb on + strand, within ABZR88_RS08235at 2052.971 kb on - strand, within ABZR88_RS08235at 2052.971 kb on - strand, within ABZR88_RS08235at 2052.993 kb on + strand, within ABZR88_RS08235at 2053.217 kb on - strandat 2053.304 kb on - strandat 2053.363 kb on + strandat 2053.363 kb on + strandat 2053.430 kb on + strandat 2053.576 kb on + strand, within ABZR88_RS08240at 2053.813 kb on + strand, within ABZR88_RS08240at 2053.813 kb on + strand, within ABZR88_RS08240at 2053.989 kb on - strand, within ABZR88_RS08240at 2054.094 kb on + strand, within ABZR88_RS08240at 2054.155 kb on + strand, within ABZR88_RS08240at 2054.183 kb on - strand, within ABZR88_RS08240

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 15C; 72 hours
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2,049,214 + +0.4
2,049,356 - +0.1
2,049,384 + +0.0
2,049,444 + +0.2
2,049,626 - -0.5
2,049,628 + -0.4
2,049,767 + +0.1
2,049,950 + -0.3
2,049,951 - -0.3
2,049,957 + +1.2
2,050,127 + -0.4
2,050,140 - -0.6
2,050,284 - +0.5
2,050,325 + +0.5
2,050,495 + ABZR88_RS08235 0.13 -1.4
2,050,495 + ABZR88_RS08235 0.13 -0.6
2,050,499 + ABZR88_RS08235 0.13 -0.2
2,050,499 + ABZR88_RS08235 0.13 -0.5
2,050,538 + ABZR88_RS08235 0.14 -0.3
2,050,544 - ABZR88_RS08235 0.14 +0.2
2,050,788 - ABZR88_RS08235 0.22 -0.2
2,050,818 + ABZR88_RS08235 0.23 +0.3
2,050,979 - ABZR88_RS08235 0.27 -0.4
2,050,989 + ABZR88_RS08235 0.28 +0.7
2,050,990 - ABZR88_RS08235 0.28 -0.6
2,051,253 + ABZR88_RS08235 0.36 +0.1
2,051,279 + ABZR88_RS08235 0.37 -0.1
2,051,279 + ABZR88_RS08235 0.37 +0.2
2,051,303 - ABZR88_RS08235 0.38 +1.1
2,051,442 + ABZR88_RS08235 0.42 +0.0
2,051,634 + ABZR88_RS08235 0.48 -0.1
2,051,654 - ABZR88_RS08235 0.48 -0.6
2,051,688 - ABZR88_RS08235 0.49 -0.9
2,051,726 - ABZR88_RS08235 0.51 -0.0
2,051,735 + ABZR88_RS08235 0.51 -0.0
2,051,762 + ABZR88_RS08235 0.52 -1.5
2,051,900 + ABZR88_RS08235 0.56 -0.1
2,051,979 + ABZR88_RS08235 0.58 +0.1
2,052,225 - ABZR88_RS08235 0.66 -0.1
2,052,372 + ABZR88_RS08235 0.71 -0.0
2,052,648 + ABZR88_RS08235 0.79 -0.3
2,052,652 - ABZR88_RS08235 0.79 -0.8
2,052,784 - ABZR88_RS08235 0.83 +0.4
2,052,786 - ABZR88_RS08235 0.83 -0.2
2,052,821 + ABZR88_RS08235 0.84 +0.2
2,052,877 - ABZR88_RS08235 0.86 -0.6
2,052,885 + ABZR88_RS08235 0.86 -0.3
2,052,886 - ABZR88_RS08235 0.86 -0.2
2,052,970 + ABZR88_RS08235 0.89 -0.0
2,052,971 - ABZR88_RS08235 0.89 -0.2
2,052,971 - ABZR88_RS08235 0.89 +0.1
2,052,993 + ABZR88_RS08235 0.90 -0.5
2,053,217 - +0.0
2,053,304 - -0.4
2,053,363 + -0.4
2,053,363 + -0.7
2,053,430 + -0.3
2,053,576 + ABZR88_RS08240 0.16 -1.7
2,053,813 + ABZR88_RS08240 0.32 -0.7
2,053,813 + ABZR88_RS08240 0.32 -1.6
2,053,989 - ABZR88_RS08240 0.44 -1.1
2,054,094 + ABZR88_RS08240 0.51 -0.1
2,054,155 + ABZR88_RS08240 0.55 -0.9
2,054,183 - ABZR88_RS08240 0.57 +0.6

Or see this region's nucleotide sequence