Experiment: R2A 15C; 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS08235 and ABZR88_RS08240 are separated by 19 nucleotides
ABZR88_RS08235: ABZR88_RS08235 - SusC/RagA family TonB-linked outer membrane protein, at 2,050,089 to 2,053,325
_RS08235
ABZR88_RS08240: ABZR88_RS08240 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 2,053,345 to 2,054,817
_RS08240
Position (kb)
2050
2051
2052
2053
2054 Strain fitness (log2 ratio)
-1
0
1 at 2049.214 kb on + strand at 2049.356 kb on - strand at 2049.384 kb on + strand at 2049.444 kb on + strand at 2049.626 kb on - strand at 2049.628 kb on + strand at 2049.767 kb on + strand at 2049.950 kb on + strand at 2049.951 kb on - strand at 2049.957 kb on + strand at 2050.127 kb on + strand at 2050.140 kb on - strand at 2050.284 kb on - strand at 2050.325 kb on + strand at 2050.495 kb on + strand, within ABZR88_RS08235 at 2050.495 kb on + strand, within ABZR88_RS08235 at 2050.499 kb on + strand, within ABZR88_RS08235 at 2050.499 kb on + strand, within ABZR88_RS08235 at 2050.538 kb on + strand, within ABZR88_RS08235 at 2050.544 kb on - strand, within ABZR88_RS08235 at 2050.788 kb on - strand, within ABZR88_RS08235 at 2050.818 kb on + strand, within ABZR88_RS08235 at 2050.979 kb on - strand, within ABZR88_RS08235 at 2050.989 kb on + strand, within ABZR88_RS08235 at 2050.990 kb on - strand, within ABZR88_RS08235 at 2051.253 kb on + strand, within ABZR88_RS08235 at 2051.279 kb on + strand, within ABZR88_RS08235 at 2051.279 kb on + strand, within ABZR88_RS08235 at 2051.303 kb on - strand, within ABZR88_RS08235 at 2051.442 kb on + strand, within ABZR88_RS08235 at 2051.634 kb on + strand, within ABZR88_RS08235 at 2051.654 kb on - strand, within ABZR88_RS08235 at 2051.688 kb on - strand, within ABZR88_RS08235 at 2051.726 kb on - strand, within ABZR88_RS08235 at 2051.735 kb on + strand, within ABZR88_RS08235 at 2051.762 kb on + strand, within ABZR88_RS08235 at 2051.900 kb on + strand, within ABZR88_RS08235 at 2051.979 kb on + strand, within ABZR88_RS08235 at 2052.225 kb on - strand, within ABZR88_RS08235 at 2052.372 kb on + strand, within ABZR88_RS08235 at 2052.648 kb on + strand, within ABZR88_RS08235 at 2052.652 kb on - strand, within ABZR88_RS08235 at 2052.784 kb on - strand, within ABZR88_RS08235 at 2052.786 kb on - strand, within ABZR88_RS08235 at 2052.821 kb on + strand, within ABZR88_RS08235 at 2052.877 kb on - strand, within ABZR88_RS08235 at 2052.885 kb on + strand, within ABZR88_RS08235 at 2052.886 kb on - strand, within ABZR88_RS08235 at 2052.970 kb on + strand, within ABZR88_RS08235 at 2052.971 kb on - strand, within ABZR88_RS08235 at 2052.971 kb on - strand, within ABZR88_RS08235 at 2052.993 kb on + strand, within ABZR88_RS08235 at 2053.217 kb on - strand at 2053.304 kb on - strand at 2053.363 kb on + strand at 2053.363 kb on + strand at 2053.430 kb on + strand at 2053.576 kb on + strand, within ABZR88_RS08240 at 2053.813 kb on + strand, within ABZR88_RS08240 at 2053.813 kb on + strand, within ABZR88_RS08240 at 2053.989 kb on - strand, within ABZR88_RS08240 at 2054.094 kb on + strand, within ABZR88_RS08240 at 2054.155 kb on + strand, within ABZR88_RS08240 at 2054.183 kb on - strand, within ABZR88_RS08240
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 15C; 72 hours remove 2,049,214 + +0.4 2,049,356 - +0.1 2,049,384 + +0.0 2,049,444 + +0.2 2,049,626 - -0.5 2,049,628 + -0.4 2,049,767 + +0.1 2,049,950 + -0.3 2,049,951 - -0.3 2,049,957 + +1.2 2,050,127 + -0.4 2,050,140 - -0.6 2,050,284 - +0.5 2,050,325 + +0.5 2,050,495 + ABZR88_RS08235 0.13 -1.4 2,050,495 + ABZR88_RS08235 0.13 -0.6 2,050,499 + ABZR88_RS08235 0.13 -0.2 2,050,499 + ABZR88_RS08235 0.13 -0.5 2,050,538 + ABZR88_RS08235 0.14 -0.3 2,050,544 - ABZR88_RS08235 0.14 +0.2 2,050,788 - ABZR88_RS08235 0.22 -0.2 2,050,818 + ABZR88_RS08235 0.23 +0.3 2,050,979 - ABZR88_RS08235 0.27 -0.4 2,050,989 + ABZR88_RS08235 0.28 +0.7 2,050,990 - ABZR88_RS08235 0.28 -0.6 2,051,253 + ABZR88_RS08235 0.36 +0.1 2,051,279 + ABZR88_RS08235 0.37 -0.1 2,051,279 + ABZR88_RS08235 0.37 +0.2 2,051,303 - ABZR88_RS08235 0.38 +1.1 2,051,442 + ABZR88_RS08235 0.42 +0.0 2,051,634 + ABZR88_RS08235 0.48 -0.1 2,051,654 - ABZR88_RS08235 0.48 -0.6 2,051,688 - ABZR88_RS08235 0.49 -0.9 2,051,726 - ABZR88_RS08235 0.51 -0.0 2,051,735 + ABZR88_RS08235 0.51 -0.0 2,051,762 + ABZR88_RS08235 0.52 -1.5 2,051,900 + ABZR88_RS08235 0.56 -0.1 2,051,979 + ABZR88_RS08235 0.58 +0.1 2,052,225 - ABZR88_RS08235 0.66 -0.1 2,052,372 + ABZR88_RS08235 0.71 -0.0 2,052,648 + ABZR88_RS08235 0.79 -0.3 2,052,652 - ABZR88_RS08235 0.79 -0.8 2,052,784 - ABZR88_RS08235 0.83 +0.4 2,052,786 - ABZR88_RS08235 0.83 -0.2 2,052,821 + ABZR88_RS08235 0.84 +0.2 2,052,877 - ABZR88_RS08235 0.86 -0.6 2,052,885 + ABZR88_RS08235 0.86 -0.3 2,052,886 - ABZR88_RS08235 0.86 -0.2 2,052,970 + ABZR88_RS08235 0.89 -0.0 2,052,971 - ABZR88_RS08235 0.89 -0.2 2,052,971 - ABZR88_RS08235 0.89 +0.1 2,052,993 + ABZR88_RS08235 0.90 -0.5 2,053,217 - +0.0 2,053,304 - -0.4 2,053,363 + -0.4 2,053,363 + -0.7 2,053,430 + -0.3 2,053,576 + ABZR88_RS08240 0.16 -1.7 2,053,813 + ABZR88_RS08240 0.32 -0.7 2,053,813 + ABZR88_RS08240 0.32 -1.6 2,053,989 - ABZR88_RS08240 0.44 -1.1 2,054,094 + ABZR88_RS08240 0.51 -0.1 2,054,155 + ABZR88_RS08240 0.55 -0.9 2,054,183 - ABZR88_RS08240 0.57 +0.6
Or see this region's nucleotide sequence