Strain Fitness in Escherichia coli ECOR38 around HEPCGN_25525

Experiment: Bas21

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas21
3,839,957	-	trpB	HEPCGN_25520	0.18	-0.3
3,839,964	+	trpB	HEPCGN_25520	0.19	+0.1
3,839,965	-	trpB	HEPCGN_25520	0.19	-0.3
3,839,992	-	trpB	HEPCGN_25520	0.21	-0.4
3,840,042	+	trpB	HEPCGN_25520	0.25	+2.6
3,840,042	+	trpB	HEPCGN_25520	0.25	-0.8
3,840,043	-	trpB	HEPCGN_25520	0.25	-0.9
3,840,043	-	trpB	HEPCGN_25520	0.25	+0.8
3,840,100	-	trpB	HEPCGN_25520	0.30	-0.6
3,840,376	+	trpB	HEPCGN_25520	0.53	-1.5
3,840,376	+	trpB	HEPCGN_25520	0.53	+0.2
3,840,376	+	trpB	HEPCGN_25520	0.53	-0.7
3,840,377	-	trpB	HEPCGN_25520	0.53	-2.5
3,840,378	+	trpB	HEPCGN_25520	0.53	-0.8
3,840,378	+	trpB	HEPCGN_25520	0.53	-0.0
3,840,379	-	trpB	HEPCGN_25520	0.53	-0.0
3,840,536	-	trpB	HEPCGN_25520	0.67	+0.1
3,840,537	+	trpB	HEPCGN_25520	0.67	+0.8
3,840,537	+	trpB	HEPCGN_25520	0.67	+0.5
3,840,670	+	trpB	HEPCGN_25520	0.78	+1.2
3,840,670	+	trpB	HEPCGN_25520	0.78	+1.8
3,840,671	-	trpB	HEPCGN_25520	0.78	-0.5
3,840,780	+	trpB	HEPCGN_25520	0.87	-0.9
3,840,888	+				-0.8
3,840,888	+				-1.3
3,840,889	-				-0.8
3,840,920	-				-0.6
3,840,923	+				-1.1
3,840,924	-				+0.7
3,840,924	-				+0.1
3,840,948	-				+1.0
3,840,950	+				+0.3
3,840,950	+				-0.4
3,841,027	-				+0.5
3,841,082	-	trpCF	HEPCGN_25525	0.10	+0.5
3,841,179	-	trpCF	HEPCGN_25525	0.17	+0.5
3,841,228	+	trpCF	HEPCGN_25525	0.21	-0.1
3,841,229	-	trpCF	HEPCGN_25525	0.21	+0.2
3,841,283	+	trpCF	HEPCGN_25525	0.25	+0.5
3,841,284	-	trpCF	HEPCGN_25525	0.25	-0.5
3,841,300	-	trpCF	HEPCGN_25525	0.26	-0.7
3,841,335	+	trpCF	HEPCGN_25525	0.29	+0.9
3,841,335	+	trpCF	HEPCGN_25525	0.29	-1.1
3,841,501	-	trpCF	HEPCGN_25525	0.41	+1.1
3,841,533	+	trpCF	HEPCGN_25525	0.43	+0.2
3,841,647	-	trpCF	HEPCGN_25525	0.52	+1.7
3,841,647	-	trpCF	HEPCGN_25525	0.52	-0.8
3,841,651	-	trpCF	HEPCGN_25525	0.52	+0.8
3,841,673	-	trpCF	HEPCGN_25525	0.53	+3.2
3,841,900	+	trpCF	HEPCGN_25525	0.70	+0.4
3,841,900	+	trpCF	HEPCGN_25525	0.70	-0.6
3,841,900	+	trpCF	HEPCGN_25525	0.70	-1.1
3,841,900	+	trpCF	HEPCGN_25525	0.70	+4.3
3,841,901	-	trpCF	HEPCGN_25525	0.70	+0.7
3,841,923	-	trpCF	HEPCGN_25525	0.72	-0.8
3,841,969	+	trpCF	HEPCGN_25525	0.75	-0.3
3,842,343	-				-0.4
3,842,419	+				-1.2
3,842,420	-				+1.1
3,842,541	-	trpD	HEPCGN_25530	0.15	+0.8
3,842,577	-	trpD	HEPCGN_25530	0.17	+0.4
3,842,727	-	trpD	HEPCGN_25530	0.26	+0.6
3,842,767	+	trpD	HEPCGN_25530	0.29	-0.4
3,842,768	-	trpD	HEPCGN_25530	0.29	-0.6
3,842,768	-	trpD	HEPCGN_25530	0.29	-1.0
3,842,846	+	trpD	HEPCGN_25530	0.34	+1.2
3,842,876	-	trpD	HEPCGN_25530	0.36	-0.3
3,842,923	-	trpD	HEPCGN_25530	0.39	+1.0
3,843,039	+	trpD	HEPCGN_25530	0.46	-0.3
3,843,039	+	trpD	HEPCGN_25530	0.46	+0.4
3,843,092	+	trpD	HEPCGN_25530	0.49	+0.5