Strain Fitness in Escherichia coli ECOR38 around HEPCGN_25425

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_25415 and yjdB are separated by 7 nucleotidesyjdB and HEPCGN_25425 are separated by 18 nucleotidesHEPCGN_25425 and HEPCGN_25430 overlap by 41 nucleotidesHEPCGN_25430 and HEPCGN_25435 are separated by 1 nucleotidesHEPCGN_25435 and HEPCGN_25440 overlap by 20 nucleotides HEPCGN_25415: HEPCGN_25415 - phage tail protein, at 3,821,081 to 3,821,476 _25415 HEPCGN_25420: yjdB - phage tail protein, at 3,821,484 to 3,822,230 yjdB HEPCGN_25425: HEPCGN_25425 - phage minor tail protein G, at 3,822,249 to 3,822,680 _25425 HEPCGN_25430: HEPCGN_25430 - Phage minor tail protein G, at 3,822,640 to 3,822,705 _25430 HEPCGN_25435: HEPCGN_25435 - phage tail assembly protein T, at 3,822,707 to 3,823,120 _25435 HEPCGN_25440: HEPCGN_25440 - phage tail tape measure protein, at 3,823,101 to 3,825,662 _25440 Position (kb) 3822 3823Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3821.399 kb on + strand, within HEPCGN_25415at 3821.400 kb on - strand, within HEPCGN_25415at 3821.405 kb on + strand, within HEPCGN_25415at 3821.453 kb on + strandat 3821.461 kb on + strandat 3821.461 kb on + strandat 3821.465 kb on + strandat 3821.562 kb on + strand, within yjdBat 3821.562 kb on + strand, within yjdBat 3821.603 kb on + strand, within yjdBat 3821.654 kb on + strand, within yjdBat 3821.654 kb on + strand, within yjdBat 3821.655 kb on - strand, within yjdBat 3821.655 kb on - strand, within yjdBat 3821.658 kb on + strand, within yjdBat 3821.659 kb on - strand, within yjdBat 3821.659 kb on - strand, within yjdBat 3821.721 kb on - strand, within yjdBat 3821.772 kb on - strand, within yjdBat 3821.773 kb on + strand, within yjdBat 3821.773 kb on + strand, within yjdBat 3821.773 kb on + strand, within yjdBat 3821.808 kb on - strand, within yjdBat 3821.925 kb on - strand, within yjdBat 3821.925 kb on - strand, within yjdBat 3821.935 kb on + strand, within yjdBat 3822.113 kb on + strand, within yjdBat 3822.123 kb on - strand, within yjdBat 3822.123 kb on - strand, within yjdBat 3822.212 kb on + strandat 3822.213 kb on - strandat 3822.278 kb on + strandat 3822.278 kb on + strandat 3822.279 kb on - strandat 3822.605 kb on + strand, within HEPCGN_25425at 3822.606 kb on - strand, within HEPCGN_25425at 3822.627 kb on - strand, within HEPCGN_25425at 3822.836 kb on + strand, within HEPCGN_25435at 3822.837 kb on - strand, within HEPCGN_25435at 3822.837 kb on - strand, within HEPCGN_25435at 3822.837 kb on - strand, within HEPCGN_25435at 3823.063 kb on - strand, within HEPCGN_25435at 3823.101 kb on - strandat 3823.136 kb on + strandat 3823.137 kb on - strandat 3823.510 kb on - strand, within HEPCGN_25440at 3823.551 kb on - strand, within HEPCGN_25440at 3823.644 kb on - strand, within HEPCGN_25440

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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3,821,399 + HEPCGN_25415 0.80 +1.0
3,821,400 - HEPCGN_25415 0.81 +0.5
3,821,405 + HEPCGN_25415 0.82 +0.3
3,821,453 + -0.1
3,821,461 + -1.2
3,821,461 + -0.6
3,821,465 + -0.2
3,821,562 + yjdB HEPCGN_25420 0.10 -0.4
3,821,562 + yjdB HEPCGN_25420 0.10 +0.1
3,821,603 + yjdB HEPCGN_25420 0.16 +0.1
3,821,654 + yjdB HEPCGN_25420 0.23 +0.1
3,821,654 + yjdB HEPCGN_25420 0.23 +0.0
3,821,655 - yjdB HEPCGN_25420 0.23 +0.1
3,821,655 - yjdB HEPCGN_25420 0.23 -0.9
3,821,658 + yjdB HEPCGN_25420 0.23 -0.9
3,821,659 - yjdB HEPCGN_25420 0.23 +2.9
3,821,659 - yjdB HEPCGN_25420 0.23 +0.9
3,821,721 - yjdB HEPCGN_25420 0.32 -1.8
3,821,772 - yjdB HEPCGN_25420 0.39 +1.4
3,821,773 + yjdB HEPCGN_25420 0.39 +0.9
3,821,773 + yjdB HEPCGN_25420 0.39 -0.6
3,821,773 + yjdB HEPCGN_25420 0.39 +2.6
3,821,808 - yjdB HEPCGN_25420 0.43 -0.6
3,821,925 - yjdB HEPCGN_25420 0.59 -1.2
3,821,925 - yjdB HEPCGN_25420 0.59 -0.6
3,821,935 + yjdB HEPCGN_25420 0.60 -2.4
3,822,113 + yjdB HEPCGN_25420 0.84 -0.9
3,822,123 - yjdB HEPCGN_25420 0.86 +0.3
3,822,123 - yjdB HEPCGN_25420 0.86 -0.3
3,822,212 + -0.2
3,822,213 - -0.3
3,822,278 + -0.1
3,822,278 + +2.1
3,822,279 - -0.0
3,822,605 + HEPCGN_25425 0.82 +0.9
3,822,606 - HEPCGN_25425 0.83 -0.5
3,822,627 - HEPCGN_25425 0.88 +1.4
3,822,836 + HEPCGN_25435 0.31 +0.8
3,822,837 - HEPCGN_25435 0.31 -0.0
3,822,837 - HEPCGN_25435 0.31 +0.5
3,822,837 - HEPCGN_25435 0.31 -1.2
3,823,063 - HEPCGN_25435 0.86 +0.4
3,823,101 - +1.4
3,823,136 + +0.1
3,823,137 - -1.1
3,823,510 - HEPCGN_25440 0.16 -0.3
3,823,551 - HEPCGN_25440 0.18 +0.2
3,823,644 - HEPCGN_25440 0.21 +0.5

Or see this region's nucleotide sequence