Strain Fitness in Escherichia coli ECOR38 around HEPCGN_25090

Experiment: Bas21

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntychT and ychE are separated by 30 nucleotidesychE and HEPCGN_25085 are separated by 26 nucleotidesHEPCGN_25085 and HEPCGN_25090 overlap by 25 nucleotidesHEPCGN_25090 and oppA are separated by 373 nucleotides HEPCGN_25075: ychT - Protein YchT, at 3,771,757 to 3,771,810 ychT HEPCGN_25080: ychE - NAAT family transporter YchE, at 3,771,841 to 3,772,488 ychE HEPCGN_25085: HEPCGN_25085 - hypothetical protein, at 3,772,515 to 3,772,670 _25085 HEPCGN_25090: HEPCGN_25090 - hypothetical protein, at 3,772,646 to 3,772,807 _25090 HEPCGN_25095: oppA - oligopeptide ABC transporter substrate-binding protein OppA, at 3,773,181 to 3,774,857 oppA Position (kb) 3772 3773Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3771.647 kb on - strandat 3771.650 kb on + strandat 3771.667 kb on + strandat 3771.671 kb on - strandat 3771.690 kb on - strandat 3771.707 kb on + strandat 3771.708 kb on - strandat 3771.711 kb on + strandat 3771.727 kb on + strandat 3771.737 kb on - strandat 3771.744 kb on + strandat 3771.803 kb on - strand, within ychTat 3771.871 kb on + strandat 3771.921 kb on + strand, within ychEat 3772.008 kb on + strand, within ychEat 3772.008 kb on + strand, within ychEat 3772.060 kb on - strand, within ychEat 3772.062 kb on - strand, within ychEat 3772.109 kb on + strand, within ychEat 3772.248 kb on + strand, within ychEat 3772.263 kb on + strand, within ychEat 3772.281 kb on + strand, within ychEat 3772.281 kb on + strand, within ychEat 3772.281 kb on + strand, within ychEat 3772.281 kb on + strand, within ychEat 3772.282 kb on - strand, within ychEat 3772.404 kb on + strand, within ychEat 3772.407 kb on + strand, within ychEat 3772.408 kb on - strand, within ychEat 3772.415 kb on + strand, within ychEat 3772.486 kb on + strandat 3772.486 kb on + strandat 3772.487 kb on - strandat 3772.525 kb on + strandat 3772.690 kb on + strand, within HEPCGN_25090at 3772.691 kb on - strand, within HEPCGN_25090at 3773.023 kb on + strandat 3773.024 kb on - strandat 3773.063 kb on - strandat 3773.063 kb on - strandat 3773.063 kb on - strandat 3773.093 kb on - strandat 3773.107 kb on + strandat 3773.108 kb on - strandat 3773.108 kb on - strandat 3773.110 kb on + strandat 3773.111 kb on - strandat 3773.111 kb on - strandat 3773.125 kb on + strandat 3773.176 kb on + strandat 3773.177 kb on - strandat 3773.198 kb on + strandat 3773.199 kb on - strandat 3773.202 kb on + strandat 3773.254 kb on + strandat 3773.254 kb on + strandat 3773.354 kb on + strand, within oppAat 3773.354 kb on + strand, within oppAat 3773.380 kb on + strand, within oppAat 3773.414 kb on + strand, within oppAat 3773.415 kb on - strand, within oppAat 3773.417 kb on + strand, within oppAat 3773.586 kb on + strand, within oppAat 3773.589 kb on - strand, within oppAat 3773.589 kb on - strand, within oppAat 3773.734 kb on + strand, within oppAat 3773.734 kb on + strand, within oppAat 3773.735 kb on - strand, within oppAat 3773.770 kb on - strand, within oppAat 3773.777 kb on - strand, within oppAat 3773.777 kb on - strand, within oppA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
remove
3,771,647 - -0.6
3,771,650 + +4.0
3,771,667 + -0.8
3,771,671 - +0.2
3,771,690 - -2.0
3,771,707 + +1.0
3,771,708 - +0.3
3,771,711 + -0.3
3,771,727 + -0.4
3,771,737 - -0.9
3,771,744 + +0.0
3,771,803 - ychT HEPCGN_25075 0.85 -0.8
3,771,871 + +0.1
3,771,921 + ychE HEPCGN_25080 0.12 -1.1
3,772,008 + ychE HEPCGN_25080 0.26 +0.9
3,772,008 + ychE HEPCGN_25080 0.26 +1.0
3,772,060 - ychE HEPCGN_25080 0.34 +1.0
3,772,062 - ychE HEPCGN_25080 0.34 +0.1
3,772,109 + ychE HEPCGN_25080 0.41 -0.3
3,772,248 + ychE HEPCGN_25080 0.63 -1.0
3,772,263 + ychE HEPCGN_25080 0.65 -0.3
3,772,281 + ychE HEPCGN_25080 0.68 -0.7
3,772,281 + ychE HEPCGN_25080 0.68 -0.8
3,772,281 + ychE HEPCGN_25080 0.68 +3.0
3,772,281 + ychE HEPCGN_25080 0.68 +0.2
3,772,282 - ychE HEPCGN_25080 0.68 -0.4
3,772,404 + ychE HEPCGN_25080 0.87 -2.3
3,772,407 + ychE HEPCGN_25080 0.87 +0.4
3,772,408 - ychE HEPCGN_25080 0.88 +0.0
3,772,415 + ychE HEPCGN_25080 0.89 +0.2
3,772,486 + +0.3
3,772,486 + +1.1
3,772,487 - -0.8
3,772,525 + -0.8
3,772,690 + HEPCGN_25090 0.27 +3.6
3,772,691 - HEPCGN_25090 0.28 +1.3
3,773,023 + +0.1
3,773,024 - -0.3
3,773,063 - -2.3
3,773,063 - -1.9
3,773,063 - -0.4
3,773,093 - -1.6
3,773,107 + -0.9
3,773,108 - +0.5
3,773,108 - -0.8
3,773,110 + -0.0
3,773,111 - -0.3
3,773,111 - -0.8
3,773,125 + +0.7
3,773,176 + -1.2
3,773,177 - +0.1
3,773,198 + -0.3
3,773,199 - -1.1
3,773,202 + -0.2
3,773,254 + +0.3
3,773,254 + -1.0
3,773,354 + oppA HEPCGN_25095 0.10 +0.2
3,773,354 + oppA HEPCGN_25095 0.10 -3.3
3,773,380 + oppA HEPCGN_25095 0.12 -2.0
3,773,414 + oppA HEPCGN_25095 0.14 -1.6
3,773,415 - oppA HEPCGN_25095 0.14 -2.2
3,773,417 + oppA HEPCGN_25095 0.14 -0.2
3,773,586 + oppA HEPCGN_25095 0.24 -0.9
3,773,589 - oppA HEPCGN_25095 0.24 +1.2
3,773,589 - oppA HEPCGN_25095 0.24 -0.3
3,773,734 + oppA HEPCGN_25095 0.33 -1.2
3,773,734 + oppA HEPCGN_25095 0.33 -1.5
3,773,735 - oppA HEPCGN_25095 0.33 +0.2
3,773,770 - oppA HEPCGN_25095 0.35 +0.4
3,773,777 - oppA HEPCGN_25095 0.36 -0.9
3,773,777 - oppA HEPCGN_25095 0.36 -0.5

Or see this region's nucleotide sequence