Strain Fitness in Escherichia coli ECOR38 around HEPCGN_23285

Experiment: Bas21

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas21
3,452,813	-	ycbZ	HEPCGN_23275	0.88	-0.4
3,452,813	-	ycbZ	HEPCGN_23275	0.88	-0.7
3,452,917	-				-0.2
3,452,965	+				+0.5
3,452,975	+				+0.5
3,453,082	+				+0.3
3,453,082	+				+0.4
3,453,098	+				+0.5
3,453,180	+				+1.2
3,453,209	+				-0.0
3,453,251	+	matP	HEPCGN_23280	0.11	+0.0
3,453,282	+	matP	HEPCGN_23280	0.17	+0.3
3,453,294	-	matP	HEPCGN_23280	0.20	+0.6
3,453,297	+	matP	HEPCGN_23280	0.21	-0.8
3,453,448	+	matP	HEPCGN_23280	0.54	+0.1
3,453,467	-	matP	HEPCGN_23280	0.58	-0.6
3,453,654	-				+0.5
3,453,677	+				+0.5
3,453,969	-	ompA	HEPCGN_23285	0.22	+1.7
3,454,145	-	ompA	HEPCGN_23285	0.39	+0.8
3,454,178	-	ompA	HEPCGN_23285	0.42	+1.4
3,454,178	-	ompA	HEPCGN_23285	0.42	+0.7
3,454,290	-	ompA	HEPCGN_23285	0.53	-0.1
3,454,394	-	ompA	HEPCGN_23285	0.63	+0.4
3,454,443	-	ompA	HEPCGN_23285	0.67	+0.5
3,454,443	-	ompA	HEPCGN_23285	0.67	-0.3
3,454,443	-	ompA	HEPCGN_23285	0.67	+0.7
3,454,443	-	ompA	HEPCGN_23285	0.67	+0.3
3,454,550	-	ompA	HEPCGN_23285	0.78	+1.0
3,454,648	-	ompA	HEPCGN_23285	0.87	+0.9
3,454,701	-				+2.4
3,454,801	-				-1.1
3,454,824	-				+2.3
3,454,877	+				+0.8
3,454,878	-				+0.6
3,454,878	-				-1.5
3,454,878	-				+0.1
3,454,924	-				+1.1
3,454,938	-				+0.9
3,454,938	-				+2.4
3,454,949	+				+0.1
3,454,991	+				+0.1
3,454,991	+				-0.6
3,454,991	+				-1.0
3,455,134	-				+0.4
3,455,222	+	sulA	HEPCGN_23290	0.16	-2.2
3,455,318	-	sulA	HEPCGN_23290	0.35	-0.9
3,455,318	-	sulA	HEPCGN_23290	0.35	-1.1
3,455,388	+	sulA	HEPCGN_23290	0.48	-0.9
3,455,490	+	sulA	HEPCGN_23290	0.68	+1.5
3,455,506	-	sulA	HEPCGN_23290	0.71	+0.5
3,455,506	-	sulA	HEPCGN_23290	0.71	-0.9
3,455,506	-	sulA	HEPCGN_23290	0.71	-0.5
3,455,506	-	sulA	HEPCGN_23290	0.71	-0.7
3,455,556	-	sulA	HEPCGN_23290	0.81	+0.5
3,455,568	-	sulA	HEPCGN_23290	0.84	-0.1
3,455,635	+				-0.6
3,455,648	-				+1.2
3,455,651	+				+0.2
3,455,651	+				+1.1
3,455,719	+				-0.6