Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yejM and yejL are separated by 19 nucleotides yejL and yejK are separated by 181 nucleotides
HEPCGN_22600: yejM - LPS biosynthesis-modulating metalloenzyme YejM, at 3,290,382 to 3,292,142
yejM
HEPCGN_22605: yejL - UPF0352 protein YejL, at 3,292,162 to 3,292,389
yejL
HEPCGN_22610: yejK - nucleoid-associated protein YejK, at 3,292,571 to 3,293,578
yejK
Position (kb) 3292
3293 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3291.191 kb on + strand, within yejM at 3291.193 kb on + strand, within yejM at 3291.194 kb on - strand, within yejM at 3291.329 kb on - strand, within yejM at 3291.348 kb on - strand, within yejM at 3291.457 kb on + strand, within yejM at 3292.196 kb on - strand, within yejL at 3292.196 kb on - strand, within yejL at 3292.390 kb on - strand at 3292.423 kb on - strand at 3292.423 kb on - strand at 3292.423 kb on - strand at 3292.423 kb on - strand at 3292.425 kb on - strand at 3292.425 kb on - strand at 3292.466 kb on - strand at 3292.512 kb on + strand at 3292.556 kb on - strand at 3292.567 kb on + strand at 3292.568 kb on - strand at 3292.582 kb on + strand at 3292.710 kb on - strand, within yejK at 3292.710 kb on - strand, within yejK at 3292.710 kb on - strand, within yejK at 3292.710 kb on - strand, within yejK at 3292.730 kb on + strand, within yejK at 3292.846 kb on - strand, within yejK at 3292.898 kb on + strand, within yejK at 3292.913 kb on + strand, within yejK at 3293.011 kb on + strand, within yejK at 3293.031 kb on + strand, within yejK at 3293.251 kb on + strand, within yejK at 3293.251 kb on + strand, within yejK at 3293.251 kb on + strand, within yejK at 3293.251 kb on + strand, within yejK at 3293.251 kb on + strand, within yejK at 3293.251 kb on + strand, within yejK at 3293.252 kb on - strand, within yejK at 3293.252 kb on - strand, within yejK at 3293.252 kb on - strand, within yejK at 3293.252 kb on - strand, within yejK at 3293.252 kb on - strand, within yejK at 3293.256 kb on - strand, within yejK at 3293.256 kb on - strand, within yejK
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 3,291,191 + yejM HEPCGN_22600 0.46 -1.7 3,291,193 + yejM HEPCGN_22600 0.46 -0.1 3,291,194 - yejM HEPCGN_22600 0.46 -1.2 3,291,329 - yejM HEPCGN_22600 0.54 +1.9 3,291,348 - yejM HEPCGN_22600 0.55 -1.4 3,291,457 + yejM HEPCGN_22600 0.61 -1.3 3,292,196 - yejL HEPCGN_22605 0.15 -1.3 3,292,196 - yejL HEPCGN_22605 0.15 -1.8 3,292,390 - +0.4 3,292,423 - +1.5 3,292,423 - +1.8 3,292,423 - -0.9 3,292,423 - -0.9 3,292,425 - -0.8 3,292,425 - -1.1 3,292,466 - -0.2 3,292,512 + -0.9 3,292,556 - -1.2 3,292,567 + +3.2 3,292,568 - -0.0 3,292,582 + +0.4 3,292,710 - yejK HEPCGN_22610 0.14 +0.5 3,292,710 - yejK HEPCGN_22610 0.14 -0.2 3,292,710 - yejK HEPCGN_22610 0.14 +0.5 3,292,710 - yejK HEPCGN_22610 0.14 -1.5 3,292,730 + yejK HEPCGN_22610 0.16 -1.2 3,292,846 - yejK HEPCGN_22610 0.27 -0.4 3,292,898 + yejK HEPCGN_22610 0.32 -0.3 3,292,913 + yejK HEPCGN_22610 0.34 -0.4 3,293,011 + yejK HEPCGN_22610 0.44 +1.3 3,293,031 + yejK HEPCGN_22610 0.46 +0.1 3,293,251 + yejK HEPCGN_22610 0.67 -1.3 3,293,251 + yejK HEPCGN_22610 0.67 +1.9 3,293,251 + yejK HEPCGN_22610 0.67 +0.9 3,293,251 + yejK HEPCGN_22610 0.67 -0.4 3,293,251 + yejK HEPCGN_22610 0.67 +0.0 3,293,251 + yejK HEPCGN_22610 0.67 +0.5 3,293,252 - yejK HEPCGN_22610 0.68 -0.5 3,293,252 - yejK HEPCGN_22610 0.68 +0.7 3,293,252 - yejK HEPCGN_22610 0.68 +0.1 3,293,252 - yejK HEPCGN_22610 0.68 -0.2 3,293,252 - yejK HEPCGN_22610 0.68 -0.1 3,293,256 - yejK HEPCGN_22610 0.68 -0.0 3,293,256 - yejK HEPCGN_22610 0.68 +1.1
Or see this region's nucleotide sequence