Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt der and HEPCGN_20870 are separated by 62 nucleotides HEPCGN_20870 and HEPCGN_20875 are separated by 209 nucleotides HEPCGN_20875 and sinH are separated by 63 nucleotides
HEPCGN_20865: der - ribosome biogenesis GTPase Der, at 2,916,242 to 2,917,714
der
HEPCGN_20870: HEPCGN_20870 - zinc-ribbons, at 2,917,777 to 2,917,992
_20870
HEPCGN_20875: HEPCGN_20875 - Intimin ((Attaching and effacing protein) or invasin protein (SivH-like)), at 2,918,202 to 2,918,633
_20875
HEPCGN_20880: sinH - intimin-like inverse autotransporter SinH, at 2,918,697 to 2,920,376
sinH
Position (kb)
2917
2918 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2917.758 kb on + strand at 2917.776 kb on + strand at 2917.777 kb on - strand at 2917.930 kb on + strand, within HEPCGN_20870 at 2917.930 kb on + strand, within HEPCGN_20870 at 2918.222 kb on + strand at 2918.382 kb on - strand, within HEPCGN_20875 at 2918.492 kb on + strand, within HEPCGN_20875 at 2918.492 kb on + strand, within HEPCGN_20875 at 2918.492 kb on + strand, within HEPCGN_20875 at 2918.592 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 2,917,758 + +1.2 2,917,776 + +0.2 2,917,777 - -0.5 2,917,930 + HEPCGN_20870 0.71 -0.9 2,917,930 + HEPCGN_20870 0.71 +2.8 2,918,222 + +0.9 2,918,382 - HEPCGN_20875 0.42 -1.0 2,918,492 + HEPCGN_20875 0.67 +0.2 2,918,492 + HEPCGN_20875 0.67 +0.1 2,918,492 + HEPCGN_20875 0.67 +2.9 2,918,592 - +0.5
Or see this region's nucleotide sequence