Strain Fitness in Escherichia coli ECOR38 around HEPCGN_20870

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntder and HEPCGN_20870 are separated by 62 nucleotidesHEPCGN_20870 and HEPCGN_20875 are separated by 209 nucleotidesHEPCGN_20875 and sinH are separated by 63 nucleotides HEPCGN_20865: der - ribosome biogenesis GTPase Der, at 2,916,242 to 2,917,714 der HEPCGN_20870: HEPCGN_20870 - zinc-ribbons, at 2,917,777 to 2,917,992 _20870 HEPCGN_20875: HEPCGN_20875 - Intimin ((Attaching and effacing protein) or invasin protein (SivH-like)), at 2,918,202 to 2,918,633 _20875 HEPCGN_20880: sinH - intimin-like inverse autotransporter SinH, at 2,918,697 to 2,920,376 sinH Position (kb) 2917 2918Strain fitness (log2 ratio) -1 0 1 2 3at 2917.758 kb on + strandat 2917.776 kb on + strandat 2917.777 kb on - strandat 2917.930 kb on + strand, within HEPCGN_20870at 2917.930 kb on + strand, within HEPCGN_20870at 2918.222 kb on + strandat 2918.382 kb on - strand, within HEPCGN_20875at 2918.492 kb on + strand, within HEPCGN_20875at 2918.492 kb on + strand, within HEPCGN_20875at 2918.492 kb on + strand, within HEPCGN_20875at 2918.592 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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2,917,758 + +1.2
2,917,776 + +0.2
2,917,777 - -0.5
2,917,930 + HEPCGN_20870 0.71 -0.9
2,917,930 + HEPCGN_20870 0.71 +2.8
2,918,222 + +0.9
2,918,382 - HEPCGN_20875 0.42 -1.0
2,918,492 + HEPCGN_20875 0.67 +0.2
2,918,492 + HEPCGN_20875 0.67 +0.1
2,918,492 + HEPCGN_20875 0.67 +2.9
2,918,592 - +0.5

Or see this region's nucleotide sequence