Strain Fitness in Escherichia coli ECOR38 around HEPCGN_19375

Experiment: Bas21

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas21
2,626,854	+	csdA	HEPCGN_19360	0.81	+2.2
2,626,854	+	csdA	HEPCGN_19360	0.81	+1.1
2,626,988	+				+0.9
2,626,989	-				-0.4
2,627,081	+				+0.3
2,627,127	+				+0.7
2,627,128	-				-0.5
2,627,141	+				+0.0
2,627,142	-				-2.5
2,627,155	-				-0.4
2,627,180	+				-0.2
2,627,190	-				-0.1
2,627,198	+				+0.6
2,627,204	+				+0.6
2,627,236	-				-0.6
2,627,236	-				+0.0
2,627,290	+				+2.4
2,627,342	+	ygdI	HEPCGN_19365	0.32	-0.2
2,627,342	+	ygdI	HEPCGN_19365	0.32	-0.5
2,627,461	+	ygdI	HEPCGN_19365	0.84	-0.1
2,627,542	+				+1.8
2,627,543	-				-0.6
2,627,543	-				-0.2
2,627,547	+				-1.2
2,627,570	-				+0.6
2,627,570	-				+0.1
2,627,576	-				+0.5
2,627,729	-				+0.8
2,627,730	+				+0.6
2,627,731	-				+1.1
2,627,731	-				+0.8
2,627,731	-				-1.2
2,627,731	-				+2.2
2,627,734	+				+0.9
2,627,841	-				+0.2
2,627,958	-	gcvA	HEPCGN_19375	0.12	+1.2
2,627,958	-	gcvA	HEPCGN_19375	0.12	+1.1
2,627,958	-	gcvA	HEPCGN_19375	0.12	+0.8
2,627,958	-	gcvA	HEPCGN_19375	0.12	-2.0
2,628,146	+	gcvA	HEPCGN_19375	0.32	+0.6
2,628,252	+	gcvA	HEPCGN_19375	0.44	+1.2
2,628,252	+	gcvA	HEPCGN_19375	0.44	+1.7
2,628,252	+	gcvA	HEPCGN_19375	0.44	+2.7
2,628,253	-	gcvA	HEPCGN_19375	0.44	+1.9
2,628,312	-	gcvA	HEPCGN_19375	0.51	+3.0
2,628,342	-	gcvA	HEPCGN_19375	0.54	+2.5
2,628,414	+	gcvA	HEPCGN_19375	0.62	+0.6
2,628,414	+	gcvA	HEPCGN_19375	0.62	+1.6
2,628,415	-	gcvA	HEPCGN_19375	0.62	+0.6
2,628,419	+	gcvA	HEPCGN_19375	0.62	+1.1
2,628,419	+	gcvA	HEPCGN_19375	0.62	+0.8
2,628,422	+	gcvA	HEPCGN_19375	0.63	+1.4
2,628,423	-	gcvA	HEPCGN_19375	0.63	+1.9
2,628,423	-	gcvA	HEPCGN_19375	0.63	+0.5
2,628,423	-	gcvA	HEPCGN_19375	0.63	+1.0
2,628,454	+	gcvA	HEPCGN_19375	0.66	+3.5
2,628,454	+	gcvA	HEPCGN_19375	0.66	+1.0
2,628,454	+	gcvA	HEPCGN_19375	0.66	+1.5
2,628,457	-	gcvA	HEPCGN_19375	0.66	+0.0
2,628,457	-	gcvA	HEPCGN_19375	0.66	-1.1
2,628,508	-	gcvA	HEPCGN_19375	0.72	+1.5
2,628,618	+	gcvA	HEPCGN_19375	0.84	+1.9
2,628,637	-	gcvA	HEPCGN_19375	0.86	+1.6
2,628,754	+				+0.4
2,628,867	-	ygdD	HEPCGN_19380	0.21	-0.2
2,628,947	+	ygdD	HEPCGN_19380	0.41	+1.2
2,628,948	-	ygdD	HEPCGN_19380	0.41	-0.0
2,628,981	+	ygdD	HEPCGN_19380	0.50	-0.1
2,629,178	-				+0.1
2,629,185	+				-0.4
2,629,185	+				-1.2
2,629,185	+				+0.8
2,629,186	-				-1.5
2,629,302	-	rlmM	HEPCGN_19385	0.12	-0.8
2,629,302	-	rlmM	HEPCGN_19385	0.12	+1.9
2,629,310	+	rlmM	HEPCGN_19385	0.13	-0.5
2,629,331	-	rlmM	HEPCGN_19385	0.14	-1.3
2,629,336	-	rlmM	HEPCGN_19385	0.15	-0.7
2,629,430	-	rlmM	HEPCGN_19385	0.23	+0.2
2,629,430	-	rlmM	HEPCGN_19385	0.23	-1.7
2,629,458	+	rlmM	HEPCGN_19385	0.26	-0.8
2,629,589	+	rlmM	HEPCGN_19385	0.38	-0.1
2,629,589	+	rlmM	HEPCGN_19385	0.38	+1.7
2,629,590	-	rlmM	HEPCGN_19385	0.38	-0.3
2,629,620	+	rlmM	HEPCGN_19385	0.41	-0.5
2,629,620	+	rlmM	HEPCGN_19385	0.41	-0.4
2,629,620	+	rlmM	HEPCGN_19385	0.41	+0.7
2,629,620	+	rlmM	HEPCGN_19385	0.41	-0.2
2,629,621	-	rlmM	HEPCGN_19385	0.41	-0.3
2,629,621	-	rlmM	HEPCGN_19385	0.41	-0.3
2,629,627	+	rlmM	HEPCGN_19385	0.41	-1.1
2,629,646	+	rlmM	HEPCGN_19385	0.43	+1.2
2,629,647	-	rlmM	HEPCGN_19385	0.43	+0.2
2,629,661	+	rlmM	HEPCGN_19385	0.44	-1.4
2,629,673	-	rlmM	HEPCGN_19385	0.46	-0.3
2,629,685	+	rlmM	HEPCGN_19385	0.47	-2.0
2,629,685	+	rlmM	HEPCGN_19385	0.47	+1.5
2,629,686	-	rlmM	HEPCGN_19385	0.47	-2.0
2,629,686	-	rlmM	HEPCGN_19385	0.47	-0.1