Strain Fitness in Escherichia coli ECOR38 around HEPCGN_19295

Experiment: Bas21

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas21
2,607,185	+	pulJ	HEPCGN_19280	0.87	-2.5
2,607,186	-	pulJ	HEPCGN_19280	0.87	+0.2
2,607,186	-	pulJ	HEPCGN_19280	0.87	-0.1
2,607,298	+	ygdB	HEPCGN_19285	0.10	-1.1
2,607,325	-	ygdB	HEPCGN_19285	0.17	+0.3
2,607,476	+	ygdB	HEPCGN_19285	0.54	+0.4
2,607,510	+	ygdB	HEPCGN_19285	0.62	-0.6
2,607,510	+	ygdB	HEPCGN_19285	0.62	+0.7
2,607,532	-	ygdB	HEPCGN_19285	0.67	+0.9
2,607,758	+	ppdC	HEPCGN_19290	0.34	-2.5
2,607,912	-	ppdC	HEPCGN_19290	0.81	-0.8
2,607,912	-	ppdC	HEPCGN_19290	0.81	+1.2
2,607,970	+				+1.5
2,607,984	+				-0.4
2,607,984	+				-0.1
2,607,984	+				-1.0
2,608,101	+				+0.7
2,608,188	+				+0.7
2,608,397	-	recC	HEPCGN_19295	0.12	-1.0
2,608,405	+	recC	HEPCGN_19295	0.12	+1.0
2,608,509	+	recC	HEPCGN_19295	0.16	+2.5
2,608,552	+	recC	HEPCGN_19295	0.17	-0.5
2,608,620	+	recC	HEPCGN_19295	0.19	-0.9
2,608,620	+	recC	HEPCGN_19295	0.19	+3.0
2,608,621	-	recC	HEPCGN_19295	0.19	-1.1
2,608,683	+	recC	HEPCGN_19295	0.21	-2.6
2,608,737	+	recC	HEPCGN_19295	0.22	+0.8
2,608,806	-	recC	HEPCGN_19295	0.24	-1.2
2,608,993	-	recC	HEPCGN_19295	0.30	-0.0
2,609,237	-	recC	HEPCGN_19295	0.37	+1.0
2,609,288	+	recC	HEPCGN_19295	0.39	+0.0
2,609,289	-	recC	HEPCGN_19295	0.39	+0.2
2,609,289	-	recC	HEPCGN_19295	0.39	+2.1
2,609,293	+	recC	HEPCGN_19295	0.39	+2.0
2,609,358	-	recC	HEPCGN_19295	0.41	+0.2
2,609,459	-	recC	HEPCGN_19295	0.44	+0.5
2,609,502	-	recC	HEPCGN_19295	0.45	+0.6
2,609,627	+	recC	HEPCGN_19295	0.49	+0.1
2,609,627	+	recC	HEPCGN_19295	0.49	-0.5
2,609,628	-	recC	HEPCGN_19295	0.49	+0.2
2,609,628	-	recC	HEPCGN_19295	0.49	+0.1
2,609,632	+	recC	HEPCGN_19295	0.49	+0.7
2,609,764	-	recC	HEPCGN_19295	0.53	+0.8
2,609,932	-	recC	HEPCGN_19295	0.58	-1.7
2,610,038	-	recC	HEPCGN_19295	0.61	+0.3
2,610,166	+	recC	HEPCGN_19295	0.65	+1.2
2,610,177	+	recC	HEPCGN_19295	0.65	+0.9
2,610,325	-	recC	HEPCGN_19295	0.69	+1.5
2,610,427	-	recC	HEPCGN_19295	0.72	-1.4
2,610,427	-	recC	HEPCGN_19295	0.72	-0.1
2,610,610	-	recC	HEPCGN_19295	0.78	-1.4
2,610,636	-	recC	HEPCGN_19295	0.79	-1.3
2,610,709	+	recC	HEPCGN_19295	0.81	+1.2
2,610,710	-	recC	HEPCGN_19295	0.81	+0.2
2,610,839	+	recC	HEPCGN_19295	0.85	-0.9
2,610,839	+	recC	HEPCGN_19295	0.85	-0.7
2,610,840	-	recC	HEPCGN_19295	0.85	-0.7
2,610,900	-	recC	HEPCGN_19295	0.87	-0.5
2,610,943	+	recC	HEPCGN_19295	0.88	+0.4
2,610,961	-	recC	HEPCGN_19295	0.88	+0.1
2,611,039	+				+0.8
2,611,421	+				-0.4
2,611,422	-				-2.2
2,611,422	-				-0.5
2,611,423	+				+0.3
2,611,423	+				+0.1
2,611,423	+				-0.1
2,611,423	+				+0.2
2,611,423	+				-0.5
2,611,423	+				-0.3
2,611,424	-				-1.1
2,611,424	-				+1.3
2,611,424	-				+0.0
2,611,424	-				+0.2
2,611,424	-				+0.0
2,611,424	-				+1.0
2,611,425	+				-1.2
2,611,425	+				+0.0
2,611,431	+				+0.5
2,611,431	+				-0.7
2,611,432	-				-1.1
2,611,557	+				-0.1
2,611,557	+				-1.0
2,611,558	-				-0.2
2,611,589	-				+0.1
2,611,667	-				-3.2
2,611,667	-				+0.1
2,611,684	+				+0.5
2,611,685	-				-1.2
2,611,793	+				-2.4
2,611,856	+	ptrA	HEPCGN_19300	0.11	+0.2
2,611,902	-	ptrA	HEPCGN_19300	0.13	-0.7
2,612,017	+	ptrA	HEPCGN_19300	0.17	-0.6
2,612,018	-	ptrA	HEPCGN_19300	0.17	-0.5
2,612,018	-	ptrA	HEPCGN_19300	0.17	-1.2
2,612,018	-	ptrA	HEPCGN_19300	0.17	-0.5
2,612,132	-	ptrA	HEPCGN_19300	0.21	+0.0
2,612,146	-	ptrA	HEPCGN_19300	0.21	+0.8
2,612,161	+	ptrA	HEPCGN_19300	0.22	-0.6
2,612,202	-	ptrA	HEPCGN_19300	0.23	+0.0
2,612,205	-	ptrA	HEPCGN_19300	0.23	-0.2
2,612,243	-	ptrA	HEPCGN_19300	0.25	+2.1