Strain Fitness in Escherichia coli ECOR38 around HEPCGN_16385

Experiment: Bas21

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas21
2,026,839	+	yrdD	HEPCGN_16375	0.23	+0.0
2,026,874	+	yrdD	HEPCGN_16375	0.30	-0.8
2,026,930	+	yrdD	HEPCGN_16375	0.40	+2.7
2,026,967	+	yrdD	HEPCGN_16375	0.47	+2.4
2,026,972	-	yrdD	HEPCGN_16375	0.48	+0.8
2,026,988	+	yrdD	HEPCGN_16375	0.51	+0.6
2,027,003	+	yrdD	HEPCGN_16375	0.53	-0.5
2,027,024	+	yrdD	HEPCGN_16375	0.57	+0.1
2,027,024	+	yrdD	HEPCGN_16375	0.57	+1.4
2,027,024	+	yrdD	HEPCGN_16375	0.57	+0.3
2,027,024	+	yrdD	HEPCGN_16375	0.57	+0.3
2,027,024	+	yrdD	HEPCGN_16375	0.57	+0.1
2,027,204	+				+1.3
2,027,256	+				-0.2
2,027,256	+				-0.5
2,027,835	+				-0.8
2,027,835	+				+0.5
2,027,836	-				+0.1
2,027,836	-				-2.9
2,027,846	+				-1.2
2,027,846	+				+0.7
2,027,846	+				+0.5
2,027,847	-				-0.6
2,027,989	+	aroE	HEPCGN_16385	0.19	+0.6
2,027,989	+	aroE	HEPCGN_16385	0.19	-0.8
2,027,990	-	aroE	HEPCGN_16385	0.19	+0.1
2,028,001	+	aroE	HEPCGN_16385	0.20	-0.8
2,028,001	+	aroE	HEPCGN_16385	0.20	-1.7
2,028,028	+	aroE	HEPCGN_16385	0.23	-0.5
2,028,136	+	aroE	HEPCGN_16385	0.37	-2.3
2,028,145	+	aroE	HEPCGN_16385	0.38	-3.0
2,028,146	-	aroE	HEPCGN_16385	0.38	-0.8
2,028,148	-	aroE	HEPCGN_16385	0.38	-2.1
2,028,237	+	aroE	HEPCGN_16385	0.49	-1.2
2,028,240	+	aroE	HEPCGN_16385	0.49	-0.6
2,028,240	+	aroE	HEPCGN_16385	0.49	-1.1
2,028,241	-	aroE	HEPCGN_16385	0.49	-1.3
2,028,389	-	aroE	HEPCGN_16385	0.67	+0.9
2,028,391	+	aroE	HEPCGN_16385	0.68	+0.9
2,028,421	+	aroE	HEPCGN_16385	0.71	-0.3
2,028,421	+	aroE	HEPCGN_16385	0.71	-1.0
2,028,421	+	aroE	HEPCGN_16385	0.71	-1.6
2,028,468	-	aroE	HEPCGN_16385	0.77	-0.5
2,028,612	+				+0.3
2,028,612	+				+1.1
2,028,612	+				-0.3
2,028,613	-				-0.3
2,028,613	-				-0.6
2,028,613	-				-1.2
2,028,624	+				-0.1
2,028,624	+				+0.5
2,028,625	-				-0.6
2,028,625	-				-0.1
2,028,729	-	yrdB	HEPCGN_16390	0.30	-0.9
2,028,756	+	yrdB	HEPCGN_16390	0.40	+0.2
2,028,757	-	yrdB	HEPCGN_16390	0.41	-0.7
2,028,860	+	yrdB	HEPCGN_16390	0.81	+0.4
2,028,937	+				-0.3
2,028,938	-				+0.7
2,028,941	+	yrdA	HEPCGN_16395	0.10	-0.1
2,028,941	+	yrdA	HEPCGN_16395	0.10	+0.1
2,028,941	+	yrdA	HEPCGN_16395	0.10	+0.1
2,029,015	+	yrdA	HEPCGN_16395	0.23	-1.1
2,029,016	-	yrdA	HEPCGN_16395	0.24	-0.8
2,029,086	+	yrdA	HEPCGN_16395	0.36	-0.4
2,029,087	-	yrdA	HEPCGN_16395	0.36	-0.6
2,029,220	-	yrdA	HEPCGN_16395	0.60	-0.7
2,029,220	-	yrdA	HEPCGN_16395	0.60	-0.4
2,029,247	+	yrdA	HEPCGN_16395	0.65	-0.1
2,029,248	-	yrdA	HEPCGN_16395	0.65	-0.2
2,029,248	-	yrdA	HEPCGN_16395	0.65	+1.2
2,029,248	-	yrdA	HEPCGN_16395	0.65	+0.9
2,029,284	+	yrdA	HEPCGN_16395	0.72	-0.6
2,029,285	-	yrdA	HEPCGN_16395	0.72	+1.0
2,029,288	+	yrdA	HEPCGN_16395	0.73	+0.2
2,029,289	-	yrdA	HEPCGN_16395	0.73	-0.3
2,029,289	-	yrdA	HEPCGN_16395	0.73	-0.8
2,029,289	-	yrdA	HEPCGN_16395	0.73	+0.6
2,029,289	-	yrdA	HEPCGN_16395	0.73	-1.5
2,029,289	-	yrdA	HEPCGN_16395	0.73	-1.0
2,029,289	-	yrdA	HEPCGN_16395	0.73	+1.6
2,029,289	-	yrdA	HEPCGN_16395	0.73	-0.6
2,029,289	-	yrdA	HEPCGN_16395	0.73	+0.4
2,029,289	-	yrdA	HEPCGN_16395	0.73	+0.3
2,029,293	+	yrdA	HEPCGN_16395	0.74	-0.2
2,029,293	+	yrdA	HEPCGN_16395	0.74	+0.5
2,029,293	+	yrdA	HEPCGN_16395	0.74	+0.5
2,029,293	+	yrdA	HEPCGN_16395	0.74	+0.3
2,029,293	+	yrdA	HEPCGN_16395	0.74	-0.4
2,029,370	+	yrdA	HEPCGN_16395	0.87	+0.3
2,029,383	+	yrdA	HEPCGN_16395	0.90	+3.0
2,029,383	+	yrdA	HEPCGN_16395	0.90	+0.1
2,029,425	+				+0.5
2,029,439	+				-1.1
2,029,440	-				-0.6
2,029,440	-				+0.0
2,029,440	-				-0.1
2,029,454	+				-0.6
2,029,454	+				+1.7
2,029,455	-				+0.4
2,029,466	+				-1.2
2,029,485	-				-0.7
2,029,614	+				+1.0
2,029,615	-				-1.2