Strain Fitness in Escherichia coli ECOR38 around HEPCGN_15235

Experiment: Bas21

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas21
1,807,978	+	shuU	HEPCGN_15225	0.72	-0.1
1,807,978	+	shuU	HEPCGN_15225	0.72	+0.8
1,808,021	+	shuU	HEPCGN_15225	0.77	-0.5
1,808,021	+	shuU	HEPCGN_15225	0.77	+1.2
1,808,062	+	shuU	HEPCGN_15225	0.81	+0.4
1,808,063	-	shuU	HEPCGN_15225	0.81	-1.0
1,808,063	-	shuU	HEPCGN_15225	0.81	-0.2
1,808,063	-	shuU	HEPCGN_15225	0.81	+0.2
1,808,093	+	shuU	HEPCGN_15225	0.84	+0.1
1,808,094	-	shuU	HEPCGN_15225	0.84	-0.0
1,808,094	-	shuU	HEPCGN_15225	0.84	+0.1
1,808,120	+	shuU	HEPCGN_15225	0.87	-0.8
1,808,129	-	shuU	HEPCGN_15225	0.88	+0.5
1,808,226	-				+1.2
1,808,228	+				-2.1
1,808,313	-				+0.4
1,808,361	+				-1.4
1,808,362	-				-1.5
1,808,362	-				+0.1
1,808,374	+				+0.5
1,808,518	-	chuY	HEPCGN_15230	0.31	+3.8
1,808,734	+	chuY	HEPCGN_15230	0.65	+1.2
1,809,126	+	chuX	HEPCGN_15235	0.36	-1.7
1,809,126	+	chuX	HEPCGN_15235	0.36	+1.8
1,809,126	+	chuX	HEPCGN_15235	0.36	-0.4
1,809,126	+	chuX	HEPCGN_15235	0.36	+0.9
1,809,179	-	chuX	HEPCGN_15235	0.46	+1.2
1,809,250	-	chuX	HEPCGN_15235	0.61	+0.5
1,809,253	+	chuX	HEPCGN_15235	0.61	-0.2
1,809,254	-	chuX	HEPCGN_15235	0.61	+0.3
1,809,256	+	chuX	HEPCGN_15235	0.62	+1.2
1,809,323	-	chuX	HEPCGN_15235	0.75	+1.1
1,809,349	+	chuX	HEPCGN_15235	0.81	+2.4
1,809,371	+	chuX	HEPCGN_15235	0.85	+0.4
1,809,371	+	chuX	HEPCGN_15235	0.85	-0.7
1,809,371	+	chuX	HEPCGN_15235	0.85	+0.1
1,809,371	+	chuX	HEPCGN_15235	0.85	+1.2
1,809,445	-				-0.2
1,809,445	-				-0.5
1,809,445	-				+1.5
1,809,458	+				+1.2
1,809,489	+				-0.4
1,809,490	-				-0.7
1,809,494	-				-1.3
1,809,502	+				+0.2
1,809,503	-				-0.2
1,809,510	+				-0.3
1,809,642	+	chuW	HEPCGN_15240	0.14	-0.9
1,809,810	+	chuW	HEPCGN_15240	0.26	-0.5
1,809,876	-	chuW	HEPCGN_15240	0.31	-0.6
1,809,876	-	chuW	HEPCGN_15240	0.31	-0.5
1,809,897	+	chuW	HEPCGN_15240	0.33	+0.2
1,809,915	+	chuW	HEPCGN_15240	0.34	-0.4
1,809,916	-	chuW	HEPCGN_15240	0.34	-0.1
1,809,999	+	chuW	HEPCGN_15240	0.41	+0.0
1,810,000	-	chuW	HEPCGN_15240	0.41	+0.6
1,810,203	+	chuW	HEPCGN_15240	0.56	+0.7