Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rffT and wzxE overlap by 4 nucleotides wzxE and rffA are separated by 1 nucleotides
HEPCGN_13245: rffT - TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase, at 1,392,146 to 1,393,225
rffT
HEPCGN_13250: wzxE - lipid III flippase WzxE, at 1,393,222 to 1,394,472
wzxE
HEPCGN_13255: rffA - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 1,394,474 to 1,395,604
rffA
Position (kb)
1393
1394
1395 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1392.268 kb on + strand, within rffT at 1392.289 kb on + strand, within rffT at 1392.292 kb on + strand, within rffT at 1392.293 kb on - strand, within rffT at 1392.447 kb on - strand, within rffT at 1392.447 kb on - strand, within rffT at 1392.447 kb on - strand, within rffT at 1392.543 kb on + strand, within rffT at 1392.543 kb on + strand, within rffT at 1392.543 kb on + strand, within rffT at 1392.557 kb on - strand, within rffT at 1392.588 kb on - strand, within rffT at 1392.632 kb on - strand, within rffT at 1392.742 kb on - strand, within rffT at 1392.810 kb on - strand, within rffT at 1392.859 kb on + strand, within rffT at 1392.859 kb on + strand, within rffT at 1392.859 kb on + strand, within rffT at 1392.860 kb on - strand, within rffT at 1392.860 kb on - strand, within rffT at 1392.862 kb on - strand, within rffT at 1392.886 kb on - strand, within rffT at 1392.904 kb on + strand, within rffT at 1392.905 kb on - strand, within rffT at 1392.905 kb on - strand, within rffT at 1392.929 kb on - strand, within rffT at 1393.081 kb on + strand, within rffT at 1393.115 kb on - strand, within rffT at 1393.205 kb on + strand at 1393.218 kb on - strand at 1393.218 kb on - strand at 1393.234 kb on - strand at 1393.244 kb on - strand at 1393.279 kb on - strand at 1393.280 kb on + strand at 1393.281 kb on - strand at 1393.281 kb on - strand at 1393.281 kb on - strand at 1393.281 kb on - strand at 1393.281 kb on - strand at 1393.281 kb on - strand at 1393.281 kb on - strand at 1393.281 kb on - strand at 1393.281 kb on - strand at 1393.290 kb on + strand at 1393.291 kb on - strand at 1393.292 kb on + strand at 1393.293 kb on - strand at 1393.293 kb on - strand at 1393.355 kb on - strand, within wzxE at 1393.355 kb on - strand, within wzxE at 1393.430 kb on + strand, within wzxE at 1393.431 kb on - strand, within wzxE at 1393.431 kb on - strand, within wzxE at 1393.431 kb on - strand, within wzxE at 1393.431 kb on - strand, within wzxE at 1393.456 kb on + strand, within wzxE at 1393.457 kb on - strand, within wzxE at 1393.485 kb on + strand, within wzxE at 1393.491 kb on + strand, within wzxE at 1393.492 kb on - strand, within wzxE at 1393.519 kb on - strand, within wzxE at 1393.650 kb on - strand, within wzxE at 1393.668 kb on + strand, within wzxE at 1393.672 kb on - strand, within wzxE at 1393.683 kb on - strand, within wzxE at 1393.683 kb on - strand, within wzxE at 1393.683 kb on - strand, within wzxE at 1393.735 kb on - strand, within wzxE at 1393.735 kb on - strand, within wzxE at 1393.769 kb on + strand, within wzxE at 1393.769 kb on + strand, within wzxE at 1393.769 kb on + strand, within wzxE at 1393.769 kb on + strand, within wzxE at 1393.770 kb on - strand, within wzxE at 1393.770 kb on - strand, within wzxE at 1393.770 kb on - strand, within wzxE at 1393.770 kb on - strand, within wzxE at 1393.794 kb on + strand, within wzxE at 1393.794 kb on + strand, within wzxE at 1393.812 kb on + strand, within wzxE at 1393.912 kb on + strand, within wzxE at 1393.983 kb on - strand, within wzxE at 1394.031 kb on + strand, within wzxE at 1394.069 kb on - strand, within wzxE at 1394.140 kb on - strand, within wzxE at 1394.212 kb on + strand, within wzxE at 1394.212 kb on + strand, within wzxE at 1394.213 kb on - strand, within wzxE at 1394.268 kb on - strand, within wzxE at 1394.279 kb on + strand, within wzxE at 1394.280 kb on - strand, within wzxE at 1394.472 kb on + strand at 1394.473 kb on - strand at 1394.473 kb on - strand at 1394.473 kb on - strand at 1394.504 kb on + strand at 1394.504 kb on + strand at 1394.580 kb on + strand at 1394.580 kb on + strand at 1394.643 kb on + strand, within rffA at 1394.720 kb on - strand, within rffA at 1394.724 kb on + strand, within rffA at 1394.724 kb on + strand, within rffA at 1394.731 kb on + strand, within rffA at 1394.732 kb on - strand, within rffA at 1394.732 kb on - strand, within rffA at 1394.732 kb on - strand, within rffA at 1394.732 kb on - strand, within rffA at 1394.732 kb on - strand, within rffA at 1394.814 kb on + strand, within rffA at 1394.815 kb on - strand, within rffA at 1394.815 kb on - strand, within rffA at 1394.907 kb on + strand, within rffA at 1394.934 kb on + strand, within rffA at 1394.935 kb on - strand, within rffA at 1394.938 kb on + strand, within rffA at 1395.079 kb on + strand, within rffA at 1395.080 kb on - strand, within rffA at 1395.091 kb on + strand, within rffA at 1395.092 kb on - strand, within rffA at 1395.124 kb on - strand, within rffA at 1395.164 kb on + strand, within rffA at 1395.165 kb on - strand, within rffA at 1395.169 kb on + strand, within rffA at 1395.169 kb on + strand, within rffA at 1395.170 kb on - strand, within rffA at 1395.170 kb on - strand, within rffA at 1395.170 kb on - strand, within rffA at 1395.190 kb on + strand, within rffA at 1395.191 kb on - strand, within rffA at 1395.193 kb on + strand, within rffA at 1395.193 kb on + strand, within rffA at 1395.193 kb on + strand, within rffA at 1395.193 kb on + strand, within rffA at 1395.193 kb on + strand, within rffA at 1395.194 kb on - strand, within rffA at 1395.194 kb on - strand, within rffA at 1395.369 kb on + strand, within rffA at 1395.369 kb on + strand, within rffA at 1395.369 kb on + strand, within rffA at 1395.369 kb on + strand, within rffA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 1,392,268 + rffT HEPCGN_13245 0.11 -0.4 1,392,289 + rffT HEPCGN_13245 0.13 +0.2 1,392,292 + rffT HEPCGN_13245 0.14 -1.3 1,392,293 - rffT HEPCGN_13245 0.14 -1.5 1,392,447 - rffT HEPCGN_13245 0.28 +0.2 1,392,447 - rffT HEPCGN_13245 0.28 +0.3 1,392,447 - rffT HEPCGN_13245 0.28 -1.9 1,392,543 + rffT HEPCGN_13245 0.37 -0.8 1,392,543 + rffT HEPCGN_13245 0.37 +0.7 1,392,543 + rffT HEPCGN_13245 0.37 +0.4 1,392,557 - rffT HEPCGN_13245 0.38 -0.4 1,392,588 - rffT HEPCGN_13245 0.41 +0.4 1,392,632 - rffT HEPCGN_13245 0.45 -0.9 1,392,742 - rffT HEPCGN_13245 0.55 +0.1 1,392,810 - rffT HEPCGN_13245 0.61 +1.1 1,392,859 + rffT HEPCGN_13245 0.66 +0.2 1,392,859 + rffT HEPCGN_13245 0.66 -1.8 1,392,859 + rffT HEPCGN_13245 0.66 +0.8 1,392,860 - rffT HEPCGN_13245 0.66 -1.1 1,392,860 - rffT HEPCGN_13245 0.66 -1.8 1,392,862 - rffT HEPCGN_13245 0.66 +0.9 1,392,886 - rffT HEPCGN_13245 0.69 -0.5 1,392,904 + rffT HEPCGN_13245 0.70 +1.9 1,392,905 - rffT HEPCGN_13245 0.70 -0.1 1,392,905 - rffT HEPCGN_13245 0.70 -2.9 1,392,929 - rffT HEPCGN_13245 0.72 -0.9 1,393,081 + rffT HEPCGN_13245 0.87 -0.6 1,393,115 - rffT HEPCGN_13245 0.90 +0.1 1,393,205 + -0.1 1,393,218 - +1.5 1,393,218 - +1.2 1,393,234 - +0.4 1,393,244 - -2.4 1,393,279 - +0.0 1,393,280 + -0.6 1,393,281 - -1.7 1,393,281 - -0.1 1,393,281 - -0.8 1,393,281 - -1.1 1,393,281 - +0.0 1,393,281 - -0.3 1,393,281 - -1.8 1,393,281 - +2.2 1,393,281 - +0.2 1,393,290 + +0.7 1,393,291 - -1.4 1,393,292 + -1.7 1,393,293 - -1.9 1,393,293 - -4.3 1,393,355 - wzxE HEPCGN_13250 0.11 -2.5 1,393,355 - wzxE HEPCGN_13250 0.11 -2.0 1,393,430 + wzxE HEPCGN_13250 0.17 -0.4 1,393,431 - wzxE HEPCGN_13250 0.17 -2.7 1,393,431 - wzxE HEPCGN_13250 0.17 -2.5 1,393,431 - wzxE HEPCGN_13250 0.17 -2.3 1,393,431 - wzxE HEPCGN_13250 0.17 -3.7 1,393,456 + wzxE HEPCGN_13250 0.19 +2.0 1,393,457 - wzxE HEPCGN_13250 0.19 -0.2 1,393,485 + wzxE HEPCGN_13250 0.21 -1.5 1,393,491 + wzxE HEPCGN_13250 0.22 -1.6 1,393,492 - wzxE HEPCGN_13250 0.22 -0.3 1,393,519 - wzxE HEPCGN_13250 0.24 -2.3 1,393,650 - wzxE HEPCGN_13250 0.34 -2.2 1,393,668 + wzxE HEPCGN_13250 0.36 -1.8 1,393,672 - wzxE HEPCGN_13250 0.36 -2.4 1,393,683 - wzxE HEPCGN_13250 0.37 -1.3 1,393,683 - wzxE HEPCGN_13250 0.37 -2.2 1,393,683 - wzxE HEPCGN_13250 0.37 +0.7 1,393,735 - wzxE HEPCGN_13250 0.41 +0.0 1,393,735 - wzxE HEPCGN_13250 0.41 -2.4 1,393,769 + wzxE HEPCGN_13250 0.44 -1.0 1,393,769 + wzxE HEPCGN_13250 0.44 +1.2 1,393,769 + wzxE HEPCGN_13250 0.44 +0.5 1,393,769 + wzxE HEPCGN_13250 0.44 -2.1 1,393,770 - wzxE HEPCGN_13250 0.44 +0.7 1,393,770 - wzxE HEPCGN_13250 0.44 -0.9 1,393,770 - wzxE HEPCGN_13250 0.44 -1.4 1,393,770 - wzxE HEPCGN_13250 0.44 -3.1 1,393,794 + wzxE HEPCGN_13250 0.46 -0.6 1,393,794 + wzxE HEPCGN_13250 0.46 +0.9 1,393,812 + wzxE HEPCGN_13250 0.47 +0.0 1,393,912 + wzxE HEPCGN_13250 0.55 -0.6 1,393,983 - wzxE HEPCGN_13250 0.61 +2.2 1,394,031 + wzxE HEPCGN_13250 0.65 -2.2 1,394,069 - wzxE HEPCGN_13250 0.68 -0.6 1,394,140 - wzxE HEPCGN_13250 0.73 -1.7 1,394,212 + wzxE HEPCGN_13250 0.79 +0.2 1,394,212 + wzxE HEPCGN_13250 0.79 -1.3 1,394,213 - wzxE HEPCGN_13250 0.79 -0.8 1,394,268 - wzxE HEPCGN_13250 0.84 -2.1 1,394,279 + wzxE HEPCGN_13250 0.84 -0.3 1,394,280 - wzxE HEPCGN_13250 0.85 -0.3 1,394,472 + -1.4 1,394,473 - -2.1 1,394,473 - -1.5 1,394,473 - -4.0 1,394,504 + +2.8 1,394,504 + -0.4 1,394,580 + -0.2 1,394,580 + +3.1 1,394,643 + rffA HEPCGN_13255 0.15 -0.9 1,394,720 - rffA HEPCGN_13255 0.22 +0.4 1,394,724 + rffA HEPCGN_13255 0.22 -1.6 1,394,724 + rffA HEPCGN_13255 0.22 -0.6 1,394,731 + rffA HEPCGN_13255 0.23 +0.4 1,394,732 - rffA HEPCGN_13255 0.23 -1.4 1,394,732 - rffA HEPCGN_13255 0.23 -1.0 1,394,732 - rffA HEPCGN_13255 0.23 -1.1 1,394,732 - rffA HEPCGN_13255 0.23 -1.5 1,394,732 - rffA HEPCGN_13255 0.23 -0.3 1,394,814 + rffA HEPCGN_13255 0.30 -2.8 1,394,815 - rffA HEPCGN_13255 0.30 -1.1 1,394,815 - rffA HEPCGN_13255 0.30 -0.5 1,394,907 + rffA HEPCGN_13255 0.38 -1.3 1,394,934 + rffA HEPCGN_13255 0.41 +0.2 1,394,935 - rffA HEPCGN_13255 0.41 -3.0 1,394,938 + rffA HEPCGN_13255 0.41 +1.0 1,395,079 + rffA HEPCGN_13255 0.53 -0.2 1,395,080 - rffA HEPCGN_13255 0.54 -0.4 1,395,091 + rffA HEPCGN_13255 0.55 -3.6 1,395,092 - rffA HEPCGN_13255 0.55 -0.6 1,395,124 - rffA HEPCGN_13255 0.57 -1.3 1,395,164 + rffA HEPCGN_13255 0.61 -0.4 1,395,165 - rffA HEPCGN_13255 0.61 -0.6 1,395,169 + rffA HEPCGN_13255 0.61 +0.7 1,395,169 + rffA HEPCGN_13255 0.61 +0.1 1,395,170 - rffA HEPCGN_13255 0.62 -2.8 1,395,170 - rffA HEPCGN_13255 0.62 -0.0 1,395,170 - rffA HEPCGN_13255 0.62 -1.7 1,395,190 + rffA HEPCGN_13255 0.63 -0.8 1,395,191 - rffA HEPCGN_13255 0.63 -0.4 1,395,193 + rffA HEPCGN_13255 0.64 -2.9 1,395,193 + rffA HEPCGN_13255 0.64 +0.0 1,395,193 + rffA HEPCGN_13255 0.64 +0.6 1,395,193 + rffA HEPCGN_13255 0.64 +1.2 1,395,193 + rffA HEPCGN_13255 0.64 -0.1 1,395,194 - rffA HEPCGN_13255 0.64 +3.8 1,395,194 - rffA HEPCGN_13255 0.64 +1.8 1,395,369 + rffA HEPCGN_13255 0.79 -0.3 1,395,369 + rffA HEPCGN_13255 0.79 -1.7 1,395,369 + rffA HEPCGN_13255 0.79 -0.7 1,395,369 + rffA HEPCGN_13255 0.79 -0.3
Or see this region's nucleotide sequence