Strain Fitness in Escherichia coli ECOR38 around HEPCGN_13250

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrffT and wzxE overlap by 4 nucleotideswzxE and rffA are separated by 1 nucleotides HEPCGN_13245: rffT - TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase, at 1,392,146 to 1,393,225 rffT HEPCGN_13250: wzxE - lipid III flippase WzxE, at 1,393,222 to 1,394,472 wzxE HEPCGN_13255: rffA - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 1,394,474 to 1,395,604 rffA Position (kb) 1393 1394 1395Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1392.268 kb on + strand, within rffTat 1392.289 kb on + strand, within rffTat 1392.292 kb on + strand, within rffTat 1392.293 kb on - strand, within rffTat 1392.447 kb on - strand, within rffTat 1392.447 kb on - strand, within rffTat 1392.447 kb on - strand, within rffTat 1392.543 kb on + strand, within rffTat 1392.543 kb on + strand, within rffTat 1392.543 kb on + strand, within rffTat 1392.557 kb on - strand, within rffTat 1392.588 kb on - strand, within rffTat 1392.632 kb on - strand, within rffTat 1392.742 kb on - strand, within rffTat 1392.810 kb on - strand, within rffTat 1392.859 kb on + strand, within rffTat 1392.859 kb on + strand, within rffTat 1392.859 kb on + strand, within rffTat 1392.860 kb on - strand, within rffTat 1392.860 kb on - strand, within rffTat 1392.862 kb on - strand, within rffTat 1392.886 kb on - strand, within rffTat 1392.904 kb on + strand, within rffTat 1392.905 kb on - strand, within rffTat 1392.905 kb on - strand, within rffTat 1392.929 kb on - strand, within rffTat 1393.081 kb on + strand, within rffTat 1393.115 kb on - strand, within rffTat 1393.205 kb on + strandat 1393.218 kb on - strandat 1393.218 kb on - strandat 1393.234 kb on - strandat 1393.244 kb on - strandat 1393.279 kb on - strandat 1393.280 kb on + strandat 1393.281 kb on - strandat 1393.281 kb on - strandat 1393.281 kb on - strandat 1393.281 kb on - strandat 1393.281 kb on - strandat 1393.281 kb on - strandat 1393.281 kb on - strandat 1393.281 kb on - strandat 1393.281 kb on - strandat 1393.290 kb on + strandat 1393.291 kb on - strandat 1393.292 kb on + strandat 1393.293 kb on - strandat 1393.293 kb on - strandat 1393.355 kb on - strand, within wzxEat 1393.355 kb on - strand, within wzxEat 1393.430 kb on + strand, within wzxEat 1393.431 kb on - strand, within wzxEat 1393.431 kb on - strand, within wzxEat 1393.431 kb on - strand, within wzxEat 1393.431 kb on - strand, within wzxEat 1393.456 kb on + strand, within wzxEat 1393.457 kb on - strand, within wzxEat 1393.485 kb on + strand, within wzxEat 1393.491 kb on + strand, within wzxEat 1393.492 kb on - strand, within wzxEat 1393.519 kb on - strand, within wzxEat 1393.650 kb on - strand, within wzxEat 1393.668 kb on + strand, within wzxEat 1393.672 kb on - strand, within wzxEat 1393.683 kb on - strand, within wzxEat 1393.683 kb on - strand, within wzxEat 1393.683 kb on - strand, within wzxEat 1393.735 kb on - strand, within wzxEat 1393.735 kb on - strand, within wzxEat 1393.769 kb on + strand, within wzxEat 1393.769 kb on + strand, within wzxEat 1393.769 kb on + strand, within wzxEat 1393.769 kb on + strand, within wzxEat 1393.770 kb on - strand, within wzxEat 1393.770 kb on - strand, within wzxEat 1393.770 kb on - strand, within wzxEat 1393.770 kb on - strand, within wzxEat 1393.794 kb on + strand, within wzxEat 1393.794 kb on + strand, within wzxEat 1393.812 kb on + strand, within wzxEat 1393.912 kb on + strand, within wzxEat 1393.983 kb on - strand, within wzxEat 1394.031 kb on + strand, within wzxEat 1394.069 kb on - strand, within wzxEat 1394.140 kb on - strand, within wzxEat 1394.212 kb on + strand, within wzxEat 1394.212 kb on + strand, within wzxEat 1394.213 kb on - strand, within wzxEat 1394.268 kb on - strand, within wzxEat 1394.279 kb on + strand, within wzxEat 1394.280 kb on - strand, within wzxEat 1394.472 kb on + strandat 1394.473 kb on - strandat 1394.473 kb on - strandat 1394.473 kb on - strandat 1394.504 kb on + strandat 1394.504 kb on + strandat 1394.580 kb on + strandat 1394.580 kb on + strandat 1394.643 kb on + strand, within rffAat 1394.720 kb on - strand, within rffAat 1394.724 kb on + strand, within rffAat 1394.724 kb on + strand, within rffAat 1394.731 kb on + strand, within rffAat 1394.732 kb on - strand, within rffAat 1394.732 kb on - strand, within rffAat 1394.732 kb on - strand, within rffAat 1394.732 kb on - strand, within rffAat 1394.732 kb on - strand, within rffAat 1394.814 kb on + strand, within rffAat 1394.815 kb on - strand, within rffAat 1394.815 kb on - strand, within rffAat 1394.907 kb on + strand, within rffAat 1394.934 kb on + strand, within rffAat 1394.935 kb on - strand, within rffAat 1394.938 kb on + strand, within rffAat 1395.079 kb on + strand, within rffAat 1395.080 kb on - strand, within rffAat 1395.091 kb on + strand, within rffAat 1395.092 kb on - strand, within rffAat 1395.124 kb on - strand, within rffAat 1395.164 kb on + strand, within rffAat 1395.165 kb on - strand, within rffAat 1395.169 kb on + strand, within rffAat 1395.169 kb on + strand, within rffAat 1395.170 kb on - strand, within rffAat 1395.170 kb on - strand, within rffAat 1395.170 kb on - strand, within rffAat 1395.190 kb on + strand, within rffAat 1395.191 kb on - strand, within rffAat 1395.193 kb on + strand, within rffAat 1395.193 kb on + strand, within rffAat 1395.193 kb on + strand, within rffAat 1395.193 kb on + strand, within rffAat 1395.193 kb on + strand, within rffAat 1395.194 kb on - strand, within rffAat 1395.194 kb on - strand, within rffAat 1395.369 kb on + strand, within rffAat 1395.369 kb on + strand, within rffAat 1395.369 kb on + strand, within rffAat 1395.369 kb on + strand, within rffA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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1,392,268 + rffT HEPCGN_13245 0.11 -0.4
1,392,289 + rffT HEPCGN_13245 0.13 +0.2
1,392,292 + rffT HEPCGN_13245 0.14 -1.3
1,392,293 - rffT HEPCGN_13245 0.14 -1.5
1,392,447 - rffT HEPCGN_13245 0.28 +0.2
1,392,447 - rffT HEPCGN_13245 0.28 +0.3
1,392,447 - rffT HEPCGN_13245 0.28 -1.9
1,392,543 + rffT HEPCGN_13245 0.37 -0.8
1,392,543 + rffT HEPCGN_13245 0.37 +0.7
1,392,543 + rffT HEPCGN_13245 0.37 +0.4
1,392,557 - rffT HEPCGN_13245 0.38 -0.4
1,392,588 - rffT HEPCGN_13245 0.41 +0.4
1,392,632 - rffT HEPCGN_13245 0.45 -0.9
1,392,742 - rffT HEPCGN_13245 0.55 +0.1
1,392,810 - rffT HEPCGN_13245 0.61 +1.1
1,392,859 + rffT HEPCGN_13245 0.66 +0.2
1,392,859 + rffT HEPCGN_13245 0.66 -1.8
1,392,859 + rffT HEPCGN_13245 0.66 +0.8
1,392,860 - rffT HEPCGN_13245 0.66 -1.1
1,392,860 - rffT HEPCGN_13245 0.66 -1.8
1,392,862 - rffT HEPCGN_13245 0.66 +0.9
1,392,886 - rffT HEPCGN_13245 0.69 -0.5
1,392,904 + rffT HEPCGN_13245 0.70 +1.9
1,392,905 - rffT HEPCGN_13245 0.70 -0.1
1,392,905 - rffT HEPCGN_13245 0.70 -2.9
1,392,929 - rffT HEPCGN_13245 0.72 -0.9
1,393,081 + rffT HEPCGN_13245 0.87 -0.6
1,393,115 - rffT HEPCGN_13245 0.90 +0.1
1,393,205 + -0.1
1,393,218 - +1.5
1,393,218 - +1.2
1,393,234 - +0.4
1,393,244 - -2.4
1,393,279 - +0.0
1,393,280 + -0.6
1,393,281 - -1.7
1,393,281 - -0.1
1,393,281 - -0.8
1,393,281 - -1.1
1,393,281 - +0.0
1,393,281 - -0.3
1,393,281 - -1.8
1,393,281 - +2.2
1,393,281 - +0.2
1,393,290 + +0.7
1,393,291 - -1.4
1,393,292 + -1.7
1,393,293 - -1.9
1,393,293 - -4.3
1,393,355 - wzxE HEPCGN_13250 0.11 -2.5
1,393,355 - wzxE HEPCGN_13250 0.11 -2.0
1,393,430 + wzxE HEPCGN_13250 0.17 -0.4
1,393,431 - wzxE HEPCGN_13250 0.17 -2.7
1,393,431 - wzxE HEPCGN_13250 0.17 -2.5
1,393,431 - wzxE HEPCGN_13250 0.17 -2.3
1,393,431 - wzxE HEPCGN_13250 0.17 -3.7
1,393,456 + wzxE HEPCGN_13250 0.19 +2.0
1,393,457 - wzxE HEPCGN_13250 0.19 -0.2
1,393,485 + wzxE HEPCGN_13250 0.21 -1.5
1,393,491 + wzxE HEPCGN_13250 0.22 -1.6
1,393,492 - wzxE HEPCGN_13250 0.22 -0.3
1,393,519 - wzxE HEPCGN_13250 0.24 -2.3
1,393,650 - wzxE HEPCGN_13250 0.34 -2.2
1,393,668 + wzxE HEPCGN_13250 0.36 -1.8
1,393,672 - wzxE HEPCGN_13250 0.36 -2.4
1,393,683 - wzxE HEPCGN_13250 0.37 -1.3
1,393,683 - wzxE HEPCGN_13250 0.37 -2.2
1,393,683 - wzxE HEPCGN_13250 0.37 +0.7
1,393,735 - wzxE HEPCGN_13250 0.41 +0.0
1,393,735 - wzxE HEPCGN_13250 0.41 -2.4
1,393,769 + wzxE HEPCGN_13250 0.44 -1.0
1,393,769 + wzxE HEPCGN_13250 0.44 +1.2
1,393,769 + wzxE HEPCGN_13250 0.44 +0.5
1,393,769 + wzxE HEPCGN_13250 0.44 -2.1
1,393,770 - wzxE HEPCGN_13250 0.44 +0.7
1,393,770 - wzxE HEPCGN_13250 0.44 -0.9
1,393,770 - wzxE HEPCGN_13250 0.44 -1.4
1,393,770 - wzxE HEPCGN_13250 0.44 -3.1
1,393,794 + wzxE HEPCGN_13250 0.46 -0.6
1,393,794 + wzxE HEPCGN_13250 0.46 +0.9
1,393,812 + wzxE HEPCGN_13250 0.47 +0.0
1,393,912 + wzxE HEPCGN_13250 0.55 -0.6
1,393,983 - wzxE HEPCGN_13250 0.61 +2.2
1,394,031 + wzxE HEPCGN_13250 0.65 -2.2
1,394,069 - wzxE HEPCGN_13250 0.68 -0.6
1,394,140 - wzxE HEPCGN_13250 0.73 -1.7
1,394,212 + wzxE HEPCGN_13250 0.79 +0.2
1,394,212 + wzxE HEPCGN_13250 0.79 -1.3
1,394,213 - wzxE HEPCGN_13250 0.79 -0.8
1,394,268 - wzxE HEPCGN_13250 0.84 -2.1
1,394,279 + wzxE HEPCGN_13250 0.84 -0.3
1,394,280 - wzxE HEPCGN_13250 0.85 -0.3
1,394,472 + -1.4
1,394,473 - -2.1
1,394,473 - -1.5
1,394,473 - -4.0
1,394,504 + +2.8
1,394,504 + -0.4
1,394,580 + -0.2
1,394,580 + +3.1
1,394,643 + rffA HEPCGN_13255 0.15 -0.9
1,394,720 - rffA HEPCGN_13255 0.22 +0.4
1,394,724 + rffA HEPCGN_13255 0.22 -1.6
1,394,724 + rffA HEPCGN_13255 0.22 -0.6
1,394,731 + rffA HEPCGN_13255 0.23 +0.4
1,394,732 - rffA HEPCGN_13255 0.23 -1.4
1,394,732 - rffA HEPCGN_13255 0.23 -1.0
1,394,732 - rffA HEPCGN_13255 0.23 -1.1
1,394,732 - rffA HEPCGN_13255 0.23 -1.5
1,394,732 - rffA HEPCGN_13255 0.23 -0.3
1,394,814 + rffA HEPCGN_13255 0.30 -2.8
1,394,815 - rffA HEPCGN_13255 0.30 -1.1
1,394,815 - rffA HEPCGN_13255 0.30 -0.5
1,394,907 + rffA HEPCGN_13255 0.38 -1.3
1,394,934 + rffA HEPCGN_13255 0.41 +0.2
1,394,935 - rffA HEPCGN_13255 0.41 -3.0
1,394,938 + rffA HEPCGN_13255 0.41 +1.0
1,395,079 + rffA HEPCGN_13255 0.53 -0.2
1,395,080 - rffA HEPCGN_13255 0.54 -0.4
1,395,091 + rffA HEPCGN_13255 0.55 -3.6
1,395,092 - rffA HEPCGN_13255 0.55 -0.6
1,395,124 - rffA HEPCGN_13255 0.57 -1.3
1,395,164 + rffA HEPCGN_13255 0.61 -0.4
1,395,165 - rffA HEPCGN_13255 0.61 -0.6
1,395,169 + rffA HEPCGN_13255 0.61 +0.7
1,395,169 + rffA HEPCGN_13255 0.61 +0.1
1,395,170 - rffA HEPCGN_13255 0.62 -2.8
1,395,170 - rffA HEPCGN_13255 0.62 -0.0
1,395,170 - rffA HEPCGN_13255 0.62 -1.7
1,395,190 + rffA HEPCGN_13255 0.63 -0.8
1,395,191 - rffA HEPCGN_13255 0.63 -0.4
1,395,193 + rffA HEPCGN_13255 0.64 -2.9
1,395,193 + rffA HEPCGN_13255 0.64 +0.0
1,395,193 + rffA HEPCGN_13255 0.64 +0.6
1,395,193 + rffA HEPCGN_13255 0.64 +1.2
1,395,193 + rffA HEPCGN_13255 0.64 -0.1
1,395,194 - rffA HEPCGN_13255 0.64 +3.8
1,395,194 - rffA HEPCGN_13255 0.64 +1.8
1,395,369 + rffA HEPCGN_13255 0.79 -0.3
1,395,369 + rffA HEPCGN_13255 0.79 -1.7
1,395,369 + rffA HEPCGN_13255 0.79 -0.7
1,395,369 + rffA HEPCGN_13255 0.79 -0.3

Or see this region's nucleotide sequence