Strain Fitness in Escherichia coli ECOR38 around HEPCGN_12915

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttatC and tatB are separated by 2 nucleotidestatB and tatA are separated by 3 nucleotidestatA and ubiB are separated by 78 nucleotides HEPCGN_12905: tatC - Sec-independent protein translocase subunit TatC, at 1,331,736 to 1,332,512 tatC HEPCGN_12910: tatB - Sec-independent protein translocase protein TatB, at 1,332,515 to 1,333,030 tatB HEPCGN_12915: tatA - Sec-independent protein translocase subunit TatA, at 1,333,034 to 1,333,303 tatA HEPCGN_12920: ubiB - ubiquinone biosynthesis regulatory protein kinase UbiB, at 1,333,382 to 1,335,022 ubiB Position (kb) 1333 1334Strain fitness (log2 ratio) -2 -1 0 1at 1332.524 kb on - strandat 1332.777 kb on - strand, within tatBat 1333.036 kb on - strandat 1333.036 kb on - strandat 1333.049 kb on - strandat 1333.254 kb on - strand, within tatAat 1333.304 kb on - strandat 1333.304 kb on - strandat 1333.304 kb on - strandat 1333.346 kb on + strandat 1333.348 kb on + strandat 1333.349 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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1,332,524 - +0.1
1,332,777 - tatB HEPCGN_12910 0.51 +0.2
1,333,036 - +0.4
1,333,036 - +0.9
1,333,049 - +0.1
1,333,254 - tatA HEPCGN_12915 0.81 -2.7
1,333,304 - -1.1
1,333,304 - -1.7
1,333,304 - -1.2
1,333,346 + +0.1
1,333,348 + +0.7
1,333,349 - -0.3

Or see this region's nucleotide sequence