Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjcS and ytcA are separated by 208 nucleotides ytcA and mdtN are separated by 18 nucleotides mdtN and mdtO overlap by 1 nucleotides
HEPCGN_11375: yjcS - alkyl sulfatase YjcS, at 1,010,667 to 1,012,652
yjcS
HEPCGN_11380: ytcA - Uncharacterized protein YtcA, at 1,012,861 to 1,013,136
ytcA
HEPCGN_11385: mdtN - multidrug efflux transporter periplasmic adaptor subunit MdtN, at 1,013,155 to 1,014,186
mdtN
HEPCGN_11390: mdtO - multidrug efflux transporter permease subunit MdtO, at 1,014,186 to 1,016,237
mdtO
Position (kb) 1013
1014
1015 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1012.262 kb on + strand, within yjcS at 1012.262 kb on + strand, within yjcS at 1012.262 kb on + strand, within yjcS at 1012.262 kb on + strand, within yjcS at 1012.263 kb on - strand, within yjcS at 1012.263 kb on - strand, within yjcS at 1012.334 kb on + strand, within yjcS at 1012.335 kb on - strand, within yjcS at 1013.083 kb on + strand, within ytcA at 1013.105 kb on - strand, within ytcA at 1013.187 kb on + strand at 1013.252 kb on + strand at 1013.272 kb on - strand, within mdtN at 1013.281 kb on + strand, within mdtN at 1013.461 kb on - strand, within mdtN at 1013.559 kb on + strand, within mdtN at 1013.560 kb on - strand, within mdtN at 1013.666 kb on + strand, within mdtN at 1013.891 kb on - strand, within mdtN at 1013.891 kb on - strand, within mdtN at 1013.929 kb on - strand, within mdtN at 1014.020 kb on + strand, within mdtN at 1014.072 kb on + strand, within mdtN at 1014.072 kb on + strand, within mdtN at 1014.076 kb on - strand, within mdtN at 1014.184 kb on + strand at 1014.185 kb on - strand at 1014.251 kb on - strand at 1014.251 kb on - strand at 1014.376 kb on - strand at 1014.468 kb on + strand, within mdtO at 1014.481 kb on - strand, within mdtO at 1014.649 kb on + strand, within mdtO at 1014.662 kb on + strand, within mdtO at 1014.662 kb on + strand, within mdtO at 1014.663 kb on - strand, within mdtO at 1014.663 kb on - strand, within mdtO at 1014.689 kb on - strand, within mdtO at 1014.933 kb on + strand, within mdtO at 1014.934 kb on - strand, within mdtO at 1014.940 kb on - strand, within mdtO at 1014.957 kb on + strand, within mdtO at 1014.958 kb on - strand, within mdtO at 1015.127 kb on + strand, within mdtO
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 1,012,262 + yjcS HEPCGN_11375 0.80 -0.8 1,012,262 + yjcS HEPCGN_11375 0.80 -1.0 1,012,262 + yjcS HEPCGN_11375 0.80 -0.3 1,012,262 + yjcS HEPCGN_11375 0.80 +0.1 1,012,263 - yjcS HEPCGN_11375 0.80 +0.3 1,012,263 - yjcS HEPCGN_11375 0.80 -1.0 1,012,334 + yjcS HEPCGN_11375 0.84 +0.3 1,012,335 - yjcS HEPCGN_11375 0.84 +1.0 1,013,083 + ytcA HEPCGN_11380 0.80 -0.3 1,013,105 - ytcA HEPCGN_11380 0.88 -2.6 1,013,187 + -0.8 1,013,252 + +1.9 1,013,272 - mdtN HEPCGN_11385 0.11 +2.6 1,013,281 + mdtN HEPCGN_11385 0.12 +1.1 1,013,461 - mdtN HEPCGN_11385 0.30 -2.0 1,013,559 + mdtN HEPCGN_11385 0.39 +1.7 1,013,560 - mdtN HEPCGN_11385 0.39 +0.2 1,013,666 + mdtN HEPCGN_11385 0.50 -0.2 1,013,891 - mdtN HEPCGN_11385 0.71 -0.3 1,013,891 - mdtN HEPCGN_11385 0.71 -0.2 1,013,929 - mdtN HEPCGN_11385 0.75 -1.6 1,014,020 + mdtN HEPCGN_11385 0.84 +0.1 1,014,072 + mdtN HEPCGN_11385 0.89 +0.4 1,014,072 + mdtN HEPCGN_11385 0.89 +0.2 1,014,076 - mdtN HEPCGN_11385 0.89 +0.2 1,014,184 + +0.3 1,014,185 - +0.4 1,014,251 - -0.9 1,014,251 - +0.5 1,014,376 - -1.0 1,014,468 + mdtO HEPCGN_11390 0.14 +1.1 1,014,481 - mdtO HEPCGN_11390 0.14 -0.2 1,014,649 + mdtO HEPCGN_11390 0.23 -0.2 1,014,662 + mdtO HEPCGN_11390 0.23 +0.0 1,014,662 + mdtO HEPCGN_11390 0.23 +0.2 1,014,663 - mdtO HEPCGN_11390 0.23 -0.1 1,014,663 - mdtO HEPCGN_11390 0.23 +1.3 1,014,689 - mdtO HEPCGN_11390 0.25 -0.4 1,014,933 + mdtO HEPCGN_11390 0.36 +1.0 1,014,934 - mdtO HEPCGN_11390 0.36 -0.5 1,014,940 - mdtO HEPCGN_11390 0.37 +1.4 1,014,957 + mdtO HEPCGN_11390 0.38 +1.5 1,014,958 - mdtO HEPCGN_11390 0.38 -1.3 1,015,127 + mdtO HEPCGN_11390 0.46 -0.8
Or see this region's nucleotide sequence