Strain Fitness in Escherichia coli ECOR38 around HEPCGN_10855

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttet(B and tetC are separated by 112 nucleotidestetC and araC are separated by 87 nucleotidesaraC and HEPCGN_10860 are separated by 9 nucleotides HEPCGN_10845: tet(B - tetracycline efflux MFS transporter Tet(B), at 910,702 to 911,907 tet(B HEPCGN_10850: tetC - tetracyline resistance-associated transcriptional repressor TetC, at 912,020 to 912,613 tetC HEPCGN_10855: araC - AraC-type DNA-binding domain and AraC-containing proteins, at 912,701 to 913,117 araC HEPCGN_10860: HEPCGN_10860 - IS4-like element ISVsa5 family transposase, at 913,127 to 914,335 _10860 Position (kb) 912 913 914Strain fitness (log2 ratio) -1 0 1 2 3at 911.886 kb on + strandat 911.984 kb on + strandat 912.110 kb on + strand, within tetCat 912.223 kb on + strand, within tetCat 912.228 kb on + strand, within tetCat 912.419 kb on - strand, within tetCat 912.706 kb on + strandat 913.045 kb on + strand, within araCat 913.130 kb on + strandat 913.173 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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911,886 + +2.8
911,984 + -0.9
912,110 + tetC HEPCGN_10850 0.15 +1.3
912,223 + tetC HEPCGN_10850 0.34 -0.5
912,228 + tetC HEPCGN_10850 0.35 -0.3
912,419 - tetC HEPCGN_10850 0.67 -1.0
912,706 + -0.0
913,045 + araC HEPCGN_10855 0.82 +1.4
913,130 + +0.1
913,173 - -0.3

Or see this region's nucleotide sequence