Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fecD and fecC overlap by 4 nucleotides fecC and fecB overlap by 4 nucleotides fecB and fecA are separated by 44 nucleotides
HEPCGN_09805: fecD - Fe(3+) dicitrate ABC transporter permease subunit FecD, at 706,739 to 707,695
fecD
HEPCGN_09810: fecC - iron-dicitrate ABC transporter permease FecC, at 707,692 to 708,690
fecC
HEPCGN_09815: fecB - Fe(3+) dicitrate ABC transporter substrate-binding protein FecB, at 708,687 to 709,589
fecB
HEPCGN_09820: fecA - Fe(3+) dicitrate transport protein FecA, at 709,634 to 711,958
fecA
Position (kb) 708
709
710 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 707.846 kb on - strand, within fecC at 707.961 kb on + strand, within fecC at 707.961 kb on + strand, within fecC at 707.962 kb on - strand, within fecC at 708.143 kb on + strand, within fecC at 708.156 kb on - strand, within fecC at 708.201 kb on + strand, within fecC at 708.335 kb on + strand, within fecC at 708.370 kb on - strand, within fecC at 708.634 kb on - strand at 708.636 kb on + strand at 708.636 kb on + strand at 708.636 kb on + strand at 708.636 kb on + strand at 708.636 kb on + strand at 708.637 kb on - strand at 708.637 kb on - strand at 708.637 kb on - strand at 708.785 kb on + strand, within fecB at 709.249 kb on + strand, within fecB at 709.496 kb on + strand, within fecB at 709.589 kb on + strand at 709.590 kb on - strand at 709.590 kb on - strand at 709.590 kb on - strand at 709.659 kb on + strand at 709.659 kb on + strand at 709.660 kb on - strand at 709.683 kb on + strand at 709.683 kb on + strand at 709.683 kb on + strand at 709.683 kb on + strand at 709.683 kb on + strand at 709.683 kb on + strand at 709.684 kb on - strand at 709.722 kb on + strand at 709.723 kb on - strand at 709.935 kb on + strand, within fecA at 709.935 kb on + strand, within fecA at 709.936 kb on - strand, within fecA at 709.958 kb on - strand, within fecA at 710.025 kb on + strand, within fecA at 710.025 kb on + strand, within fecA at 710.026 kb on - strand, within fecA at 710.026 kb on - strand, within fecA at 710.026 kb on - strand, within fecA at 710.031 kb on + strand, within fecA at 710.031 kb on + strand, within fecA at 710.032 kb on - strand, within fecA at 710.032 kb on - strand, within fecA at 710.164 kb on - strand, within fecA at 710.164 kb on - strand, within fecA at 710.301 kb on + strand, within fecA at 710.306 kb on + strand, within fecA at 710.306 kb on + strand, within fecA at 710.306 kb on + strand, within fecA at 710.395 kb on + strand, within fecA at 710.439 kb on + strand, within fecA at 710.450 kb on - strand, within fecA at 710.512 kb on - strand, within fecA at 710.542 kb on + strand, within fecA at 710.553 kb on + strand, within fecA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 707,846 - fecC HEPCGN_09810 0.15 +0.6 707,961 + fecC HEPCGN_09810 0.27 -0.2 707,961 + fecC HEPCGN_09810 0.27 -0.1 707,962 - fecC HEPCGN_09810 0.27 +3.8 708,143 + fecC HEPCGN_09810 0.45 +1.6 708,156 - fecC HEPCGN_09810 0.46 +0.0 708,201 + fecC HEPCGN_09810 0.51 +0.7 708,335 + fecC HEPCGN_09810 0.64 -0.5 708,370 - fecC HEPCGN_09810 0.68 +0.3 708,634 - -0.2 708,636 + +1.0 708,636 + -0.2 708,636 + +0.5 708,636 + -0.2 708,636 + -0.1 708,637 - -1.6 708,637 - -0.7 708,637 - -1.1 708,785 + fecB HEPCGN_09815 0.11 -1.8 709,249 + fecB HEPCGN_09815 0.62 -0.6 709,496 + fecB HEPCGN_09815 0.90 -0.8 709,589 + -1.8 709,590 - +0.3 709,590 - -2.7 709,590 - +0.7 709,659 + -0.4 709,659 + +0.4 709,660 - -0.4 709,683 + +1.1 709,683 + +0.7 709,683 + +0.9 709,683 + -0.3 709,683 + +0.4 709,683 + +0.2 709,684 - -0.7 709,722 + +0.1 709,723 - -0.1 709,935 + fecA HEPCGN_09820 0.13 +1.4 709,935 + fecA HEPCGN_09820 0.13 +0.5 709,936 - fecA HEPCGN_09820 0.13 +0.3 709,958 - fecA HEPCGN_09820 0.14 -2.7 710,025 + fecA HEPCGN_09820 0.17 +2.0 710,025 + fecA HEPCGN_09820 0.17 +1.2 710,026 - fecA HEPCGN_09820 0.17 -1.0 710,026 - fecA HEPCGN_09820 0.17 -0.2 710,026 - fecA HEPCGN_09820 0.17 -0.2 710,031 + fecA HEPCGN_09820 0.17 +0.6 710,031 + fecA HEPCGN_09820 0.17 +0.0 710,032 - fecA HEPCGN_09820 0.17 +0.0 710,032 - fecA HEPCGN_09820 0.17 +1.8 710,164 - fecA HEPCGN_09820 0.23 +1.8 710,164 - fecA HEPCGN_09820 0.23 +0.3 710,301 + fecA HEPCGN_09820 0.29 +0.9 710,306 + fecA HEPCGN_09820 0.29 +0.4 710,306 + fecA HEPCGN_09820 0.29 -0.3 710,306 + fecA HEPCGN_09820 0.29 +0.4 710,395 + fecA HEPCGN_09820 0.33 +0.5 710,439 + fecA HEPCGN_09820 0.35 +0.7 710,450 - fecA HEPCGN_09820 0.35 +0.8 710,512 - fecA HEPCGN_09820 0.38 +0.3 710,542 + fecA HEPCGN_09820 0.39 -0.6 710,553 + fecA HEPCGN_09820 0.40 -1.2
Or see this region's nucleotide sequence