Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fecE and fecD are separated by 0 nucleotides fecD and fecC overlap by 4 nucleotides fecC and fecB overlap by 4 nucleotides fecB and fecA are separated by 44 nucleotides
HEPCGN_09800: fecE - Fe(3+) dicitrate ABC transporter ATP-binding protein FecE, at 705,971 to 706,738
fecE
HEPCGN_09805: fecD - Fe(3+) dicitrate ABC transporter permease subunit FecD, at 706,739 to 707,695
fecD
HEPCGN_09810: fecC - iron-dicitrate ABC transporter permease FecC, at 707,692 to 708,690
fecC
HEPCGN_09815: fecB - Fe(3+) dicitrate ABC transporter substrate-binding protein FecB, at 708,687 to 709,589
fecB
HEPCGN_09820: fecA - Fe(3+) dicitrate transport protein FecA, at 709,634 to 711,958
fecA
Position (kb) 707
708
709 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 706.705 kb on - strand at 706.740 kb on + strand at 706.741 kb on - strand at 706.741 kb on - strand at 706.828 kb on + strand at 706.829 kb on - strand at 706.930 kb on + strand, within fecD at 706.930 kb on + strand, within fecD at 706.951 kb on + strand, within fecD at 706.984 kb on + strand, within fecD at 707.120 kb on + strand, within fecD at 707.121 kb on - strand, within fecD at 707.232 kb on + strand, within fecD at 707.233 kb on - strand, within fecD at 707.233 kb on - strand, within fecD at 707.324 kb on + strand, within fecD at 707.324 kb on + strand, within fecD at 707.325 kb on - strand, within fecD at 707.396 kb on + strand, within fecD at 707.396 kb on + strand, within fecD at 707.548 kb on - strand, within fecD at 707.562 kb on + strand, within fecD at 707.562 kb on + strand, within fecD at 707.562 kb on + strand, within fecD at 707.563 kb on - strand, within fecD at 707.563 kb on - strand, within fecD at 707.563 kb on - strand, within fecD at 707.566 kb on - strand, within fecD at 707.566 kb on - strand, within fecD at 707.640 kb on - strand at 707.846 kb on - strand, within fecC at 707.961 kb on + strand, within fecC at 707.961 kb on + strand, within fecC at 707.962 kb on - strand, within fecC at 708.143 kb on + strand, within fecC at 708.156 kb on - strand, within fecC at 708.201 kb on + strand, within fecC at 708.335 kb on + strand, within fecC at 708.370 kb on - strand, within fecC at 708.634 kb on - strand at 708.636 kb on + strand at 708.636 kb on + strand at 708.636 kb on + strand at 708.636 kb on + strand at 708.636 kb on + strand at 708.637 kb on - strand at 708.637 kb on - strand at 708.637 kb on - strand at 708.785 kb on + strand, within fecB at 709.249 kb on + strand, within fecB at 709.496 kb on + strand, within fecB at 709.589 kb on + strand at 709.590 kb on - strand at 709.590 kb on - strand at 709.590 kb on - strand at 709.659 kb on + strand at 709.659 kb on + strand at 709.660 kb on - strand at 709.683 kb on + strand at 709.683 kb on + strand at 709.683 kb on + strand at 709.683 kb on + strand at 709.683 kb on + strand at 709.683 kb on + strand at 709.684 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 706,705 - +0.2 706,740 + +0.2 706,741 - -0.4 706,741 - -1.0 706,828 + -1.2 706,829 - +0.7 706,930 + fecD HEPCGN_09805 0.20 +0.2 706,930 + fecD HEPCGN_09805 0.20 +0.4 706,951 + fecD HEPCGN_09805 0.22 -0.3 706,984 + fecD HEPCGN_09805 0.26 -0.0 707,120 + fecD HEPCGN_09805 0.40 +0.9 707,121 - fecD HEPCGN_09805 0.40 -1.2 707,232 + fecD HEPCGN_09805 0.52 -0.8 707,233 - fecD HEPCGN_09805 0.52 -0.3 707,233 - fecD HEPCGN_09805 0.52 -1.7 707,324 + fecD HEPCGN_09805 0.61 -1.6 707,324 + fecD HEPCGN_09805 0.61 +0.8 707,325 - fecD HEPCGN_09805 0.61 +0.2 707,396 + fecD HEPCGN_09805 0.69 +0.3 707,396 + fecD HEPCGN_09805 0.69 -0.5 707,548 - fecD HEPCGN_09805 0.85 -1.3 707,562 + fecD HEPCGN_09805 0.86 +0.6 707,562 + fecD HEPCGN_09805 0.86 +1.1 707,562 + fecD HEPCGN_09805 0.86 +0.2 707,563 - fecD HEPCGN_09805 0.86 +1.3 707,563 - fecD HEPCGN_09805 0.86 -0.0 707,563 - fecD HEPCGN_09805 0.86 +0.2 707,566 - fecD HEPCGN_09805 0.86 -0.4 707,566 - fecD HEPCGN_09805 0.86 +0.1 707,640 - +0.7 707,846 - fecC HEPCGN_09810 0.15 +0.6 707,961 + fecC HEPCGN_09810 0.27 -0.2 707,961 + fecC HEPCGN_09810 0.27 -0.1 707,962 - fecC HEPCGN_09810 0.27 +3.8 708,143 + fecC HEPCGN_09810 0.45 +1.6 708,156 - fecC HEPCGN_09810 0.46 +0.0 708,201 + fecC HEPCGN_09810 0.51 +0.7 708,335 + fecC HEPCGN_09810 0.64 -0.5 708,370 - fecC HEPCGN_09810 0.68 +0.3 708,634 - -0.2 708,636 + +1.0 708,636 + -0.2 708,636 + +0.5 708,636 + -0.2 708,636 + -0.1 708,637 - -1.6 708,637 - -0.7 708,637 - -1.1 708,785 + fecB HEPCGN_09815 0.11 -1.8 709,249 + fecB HEPCGN_09815 0.62 -0.6 709,496 + fecB HEPCGN_09815 0.90 -0.8 709,589 + -1.8 709,590 - +0.3 709,590 - -2.7 709,590 - +0.7 709,659 + -0.4 709,659 + +0.4 709,660 - -0.4 709,683 + +1.1 709,683 + +0.7 709,683 + +0.9 709,683 + -0.3 709,683 + +0.4 709,683 + +0.2 709,684 - -0.7
Or see this region's nucleotide sequence