Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimA and yadL are separated by 11 nucleotides yadL and HEPCGN_08340 are separated by 26 nucleotides HEPCGN_08340 and HEPCGN_08345 are separated by 49 nucleotides HEPCGN_08345 and tra5 are separated by 2 nucleotides
HEPCGN_08330: fimA - fimbrial protein, at 406,156 to 406,725
fimA
HEPCGN_08335: yadL - fimbrial-like protein YadL, at 406,737 to 407,342
yadL
HEPCGN_08340: HEPCGN_08340 - fimbrial-like protein, at 407,369 to 407,965
_08340
HEPCGN_08345: HEPCGN_08345 - fimbrial-like adhesin, at 408,015 to 408,851
_08345
HEPCGN_08350: tra5 - IS3 family transposase, at 408,854 to 409,225
tra5
Position (kb) 407
408 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 406.473 kb on + strand, within fimA at 406.473 kb on + strand, within fimA at 406.483 kb on - strand, within fimA at 406.518 kb on + strand, within fimA at 406.519 kb on - strand, within fimA at 406.522 kb on - strand, within fimA at 406.548 kb on + strand, within fimA at 406.576 kb on - strand, within fimA at 406.732 kb on + strand at 406.733 kb on - strand at 406.850 kb on + strand, within yadL at 406.853 kb on + strand, within yadL at 406.859 kb on - strand, within yadL at 406.880 kb on + strand, within yadL at 406.881 kb on - strand, within yadL at 407.027 kb on - strand, within yadL at 407.144 kb on - strand, within yadL at 407.144 kb on - strand, within yadL at 407.175 kb on - strand, within yadL at 407.182 kb on + strand, within yadL at 407.204 kb on - strand, within yadL at 407.335 kb on - strand at 407.336 kb on + strand at 407.368 kb on + strand at 407.564 kb on - strand, within HEPCGN_08340 at 407.632 kb on - strand, within HEPCGN_08340 at 407.632 kb on - strand, within HEPCGN_08340 at 407.665 kb on + strand, within HEPCGN_08340 at 407.804 kb on - strand, within HEPCGN_08340 at 407.971 kb on + strand at 407.971 kb on + strand at 407.988 kb on - strand at 408.055 kb on + strand at 408.107 kb on + strand, within HEPCGN_08345 at 408.122 kb on - strand, within HEPCGN_08345 at 408.192 kb on - strand, within HEPCGN_08345 at 408.290 kb on + strand, within HEPCGN_08345 at 408.374 kb on + strand, within HEPCGN_08345 at 408.374 kb on + strand, within HEPCGN_08345 at 408.406 kb on - strand, within HEPCGN_08345 at 408.459 kb on - strand, within HEPCGN_08345 at 408.564 kb on + strand, within HEPCGN_08345 at 408.570 kb on - strand, within HEPCGN_08345 at 408.570 kb on - strand, within HEPCGN_08345 at 408.642 kb on - strand, within HEPCGN_08345 at 408.642 kb on - strand, within HEPCGN_08345 at 408.642 kb on - strand, within HEPCGN_08345 at 408.702 kb on + strand, within HEPCGN_08345 at 408.703 kb on - strand, within HEPCGN_08345 at 408.703 kb on - strand, within HEPCGN_08345 at 408.704 kb on + strand, within HEPCGN_08345 at 408.705 kb on - strand, within HEPCGN_08345 at 408.795 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 406,473 + fimA HEPCGN_08330 0.56 +0.1 406,473 + fimA HEPCGN_08330 0.56 +0.8 406,483 - fimA HEPCGN_08330 0.57 -0.2 406,518 + fimA HEPCGN_08330 0.64 -0.9 406,519 - fimA HEPCGN_08330 0.64 +0.0 406,522 - fimA HEPCGN_08330 0.64 +0.7 406,548 + fimA HEPCGN_08330 0.69 +0.4 406,576 - fimA HEPCGN_08330 0.74 -1.8 406,732 + -0.4 406,733 - -0.2 406,850 + yadL HEPCGN_08335 0.19 -1.2 406,853 + yadL HEPCGN_08335 0.19 -0.5 406,859 - yadL HEPCGN_08335 0.20 +1.0 406,880 + yadL HEPCGN_08335 0.24 +0.3 406,881 - yadL HEPCGN_08335 0.24 +0.0 407,027 - yadL HEPCGN_08335 0.48 -0.4 407,144 - yadL HEPCGN_08335 0.67 -0.1 407,144 - yadL HEPCGN_08335 0.67 -0.5 407,175 - yadL HEPCGN_08335 0.72 -0.0 407,182 + yadL HEPCGN_08335 0.73 -1.9 407,204 - yadL HEPCGN_08335 0.77 +0.4 407,335 - +0.2 407,336 + +1.3 407,368 + +1.1 407,564 - HEPCGN_08340 0.33 +0.4 407,632 - HEPCGN_08340 0.44 -1.9 407,632 - HEPCGN_08340 0.44 -0.5 407,665 + HEPCGN_08340 0.50 -2.4 407,804 - HEPCGN_08340 0.73 -1.8 407,971 + +1.3 407,971 + -1.2 407,988 - +0.3 408,055 + +2.8 408,107 + HEPCGN_08345 0.11 +0.1 408,122 - HEPCGN_08345 0.13 +0.5 408,192 - HEPCGN_08345 0.21 -2.4 408,290 + HEPCGN_08345 0.33 +0.5 408,374 + HEPCGN_08345 0.43 -0.0 408,374 + HEPCGN_08345 0.43 -0.1 408,406 - HEPCGN_08345 0.47 +0.9 408,459 - HEPCGN_08345 0.53 -0.6 408,564 + HEPCGN_08345 0.66 +1.4 408,570 - HEPCGN_08345 0.66 +0.1 408,570 - HEPCGN_08345 0.66 +2.1 408,642 - HEPCGN_08345 0.75 -0.3 408,642 - HEPCGN_08345 0.75 +0.2 408,642 - HEPCGN_08345 0.75 -0.2 408,702 + HEPCGN_08345 0.82 +0.6 408,703 - HEPCGN_08345 0.82 -0.6 408,703 - HEPCGN_08345 0.82 +0.8 408,704 + HEPCGN_08345 0.82 +1.3 408,705 - HEPCGN_08345 0.82 +1.1 408,795 - +0.7
Or see this region's nucleotide sequence