Strain Fitness in Escherichia coli ECOR38 around HEPCGN_08075

Experiment: Bas21

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttilS and yaeR are separated by 64 nucleotidesyaeR and ldcC are separated by 56 nucleotides HEPCGN_08070: tilS - tRNA lysidine(34) synthetase TilS, at 346,563 to 347,861 tilS HEPCGN_08075: yaeR - VOC family protein, at 347,926 to 348,315 yaeR HEPCGN_08080: ldcC - lysine decarboxylase LdcC, at 348,372 to 350,513 ldcC Position (kb) 347 348 349Strain fitness (log2 ratio) -2 -1 0 1at 347.880 kb on + strandat 347.927 kb on + strandat 347.936 kb on + strandat 347.937 kb on - strandat 347.993 kb on + strand, within yaeRat 348.155 kb on + strand, within yaeRat 348.207 kb on - strand, within yaeRat 348.245 kb on + strand, within yaeRat 348.280 kb on - strandat 348.304 kb on + strandat 348.305 kb on - strandat 348.305 kb on - strandat 348.315 kb on + strandat 348.327 kb on + strandat 348.328 kb on - strandat 348.457 kb on + strandat 348.572 kb on + strandat 348.630 kb on - strand, within ldcCat 348.719 kb on + strand, within ldcCat 348.719 kb on + strand, within ldcCat 348.758 kb on + strand, within ldcCat 348.765 kb on - strand, within ldcCat 348.765 kb on - strand, within ldcCat 348.809 kb on + strand, within ldcCat 348.867 kb on + strand, within ldcCat 348.868 kb on - strand, within ldcCat 348.900 kb on - strand, within ldcCat 348.939 kb on + strand, within ldcCat 348.942 kb on + strand, within ldcCat 348.942 kb on + strand, within ldcCat 348.942 kb on + strand, within ldcC

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
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347,880 + -0.5
347,927 + -0.8
347,936 + -2.4
347,937 - -2.0
347,993 + yaeR HEPCGN_08075 0.17 +1.1
348,155 + yaeR HEPCGN_08075 0.59 +0.5
348,207 - yaeR HEPCGN_08075 0.72 +0.9
348,245 + yaeR HEPCGN_08075 0.82 +0.2
348,280 - -0.2
348,304 + +0.7
348,305 - +0.0
348,305 - +0.5
348,315 + -1.4
348,327 + +0.6
348,328 - -0.3
348,457 + +0.6
348,572 + -0.6
348,630 - ldcC HEPCGN_08080 0.12 -1.1
348,719 + ldcC HEPCGN_08080 0.16 -1.2
348,719 + ldcC HEPCGN_08080 0.16 -0.2
348,758 + ldcC HEPCGN_08080 0.18 -0.1
348,765 - ldcC HEPCGN_08080 0.18 -0.4
348,765 - ldcC HEPCGN_08080 0.18 -1.4
348,809 + ldcC HEPCGN_08080 0.20 -1.2
348,867 + ldcC HEPCGN_08080 0.23 +0.9
348,868 - ldcC HEPCGN_08080 0.23 +0.3
348,900 - ldcC HEPCGN_08080 0.25 +0.5
348,939 + ldcC HEPCGN_08080 0.26 -1.2
348,942 + ldcC HEPCGN_08080 0.27 -0.6
348,942 + ldcC HEPCGN_08080 0.27 +0.2
348,942 + ldcC HEPCGN_08080 0.27 +0.1

Or see this region's nucleotide sequence