Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt queA and acpH are separated by 92 nucleotides acpH and HEPCGN_07160 are separated by 20 nucleotides
HEPCGN_07150: queA - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 161,538 to 162,608
queA
HEPCGN_07155: acpH - ACP phosphodiesterase, at 162,701 to 163,282
acpH
HEPCGN_07160: HEPCGN_07160 - hypothetical protein, at 163,303 to 164,736
_07160
Position (kb) 162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 161.715 kb on - strand, within queA at 161.756 kb on - strand, within queA at 161.756 kb on - strand, within queA at 161.759 kb on + strand, within queA at 161.836 kb on - strand, within queA at 161.836 kb on - strand, within queA at 161.923 kb on + strand, within queA at 162.155 kb on - strand, within queA at 162.155 kb on - strand, within queA at 162.171 kb on - strand, within queA at 162.266 kb on + strand, within queA at 162.357 kb on - strand, within queA at 162.432 kb on - strand, within queA at 162.536 kb on + strand at 162.646 kb on - strand at 162.693 kb on + strand at 162.694 kb on - strand at 162.726 kb on + strand at 162.763 kb on - strand, within acpH at 162.849 kb on + strand, within acpH at 162.852 kb on + strand, within acpH at 162.853 kb on - strand, within acpH at 163.076 kb on + strand, within acpH at 163.191 kb on - strand, within acpH at 163.208 kb on + strand, within acpH at 163.208 kb on + strand, within acpH at 163.208 kb on + strand, within acpH at 163.383 kb on + strand at 163.384 kb on - strand at 163.417 kb on + strand at 163.447 kb on + strand, within HEPCGN_07160 at 163.448 kb on - strand, within HEPCGN_07160 at 163.450 kb on - strand, within HEPCGN_07160 at 163.484 kb on - strand, within HEPCGN_07160 at 163.484 kb on - strand, within HEPCGN_07160 at 163.518 kb on + strand, within HEPCGN_07160 at 163.518 kb on + strand, within HEPCGN_07160 at 163.518 kb on + strand, within HEPCGN_07160 at 163.518 kb on + strand, within HEPCGN_07160 at 163.610 kb on - strand, within HEPCGN_07160 at 163.685 kb on + strand, within HEPCGN_07160 at 163.685 kb on + strand, within HEPCGN_07160 at 163.998 kb on + strand, within HEPCGN_07160 at 164.008 kb on + strand, within HEPCGN_07160 at 164.009 kb on - strand, within HEPCGN_07160 at 164.038 kb on - strand, within HEPCGN_07160 at 164.071 kb on + strand, within HEPCGN_07160 at 164.072 kb on - strand, within HEPCGN_07160 at 164.112 kb on + strand, within HEPCGN_07160 at 164.113 kb on - strand, within HEPCGN_07160 at 164.128 kb on - strand, within HEPCGN_07160 at 164.191 kb on - strand, within HEPCGN_07160
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 161,715 - queA HEPCGN_07150 0.17 +0.1 161,756 - queA HEPCGN_07150 0.20 -2.1 161,756 - queA HEPCGN_07150 0.20 -0.8 161,759 + queA HEPCGN_07150 0.21 -0.1 161,836 - queA HEPCGN_07150 0.28 +0.3 161,836 - queA HEPCGN_07150 0.28 -0.9 161,923 + queA HEPCGN_07150 0.36 -0.5 162,155 - queA HEPCGN_07150 0.58 +0.2 162,155 - queA HEPCGN_07150 0.58 +2.1 162,171 - queA HEPCGN_07150 0.59 +2.5 162,266 + queA HEPCGN_07150 0.68 -0.6 162,357 - queA HEPCGN_07150 0.76 -1.0 162,432 - queA HEPCGN_07150 0.83 +0.0 162,536 + +0.4 162,646 - +0.7 162,693 + -0.6 162,694 - -0.0 162,726 + +0.5 162,763 - acpH HEPCGN_07155 0.11 +1.8 162,849 + acpH HEPCGN_07155 0.25 +0.4 162,852 + acpH HEPCGN_07155 0.26 -2.0 162,853 - acpH HEPCGN_07155 0.26 +0.5 163,076 + acpH HEPCGN_07155 0.64 +1.8 163,191 - acpH HEPCGN_07155 0.84 +0.8 163,208 + acpH HEPCGN_07155 0.87 +1.4 163,208 + acpH HEPCGN_07155 0.87 +3.0 163,208 + acpH HEPCGN_07155 0.87 -0.1 163,383 + +0.9 163,384 - +0.0 163,417 + -1.9 163,447 + HEPCGN_07160 0.10 +0.9 163,448 - HEPCGN_07160 0.10 -2.7 163,450 - HEPCGN_07160 0.10 +0.3 163,484 - HEPCGN_07160 0.13 -0.7 163,484 - HEPCGN_07160 0.13 -0.6 163,518 + HEPCGN_07160 0.15 -0.8 163,518 + HEPCGN_07160 0.15 -0.2 163,518 + HEPCGN_07160 0.15 +0.3 163,518 + HEPCGN_07160 0.15 -1.0 163,610 - HEPCGN_07160 0.21 -0.9 163,685 + HEPCGN_07160 0.27 +0.3 163,685 + HEPCGN_07160 0.27 -0.4 163,998 + HEPCGN_07160 0.48 +0.4 164,008 + HEPCGN_07160 0.49 -0.3 164,009 - HEPCGN_07160 0.49 +1.7 164,038 - HEPCGN_07160 0.51 +0.5 164,071 + HEPCGN_07160 0.54 -1.4 164,072 - HEPCGN_07160 0.54 -1.0 164,112 + HEPCGN_07160 0.56 +0.9 164,113 - HEPCGN_07160 0.56 -0.3 164,128 - HEPCGN_07160 0.58 +1.1 164,191 - HEPCGN_07160 0.62 +1.6
Or see this region's nucleotide sequence