Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt acrA and acrB are separated by 22 nucleotides acrB and tomB are separated by 544 nucleotides tomB and tomB are separated by 25 nucleotides
HEPCGN_06815: acrA - multidrug efflux RND transporter periplasmic adaptor subunit AcrA, at 97,611 to 98,804
acrA
HEPCGN_06820: acrB - efflux RND transporter permease AcrB, at 98,827 to 101,976
acrB
HEPCGN_06825: tomB - Hha toxicity modulator TomB, at 102,521 to 102,895
tomB
HEPCGN_06830: tomB - Hha toxicity modulator TomB, at 102,921 to 103,139
tomB
Position (kb) 98
99
100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 97.912 kb on - strand, within acrA at 97.923 kb on + strand, within acrA at 98.013 kb on - strand, within acrA at 98.019 kb on + strand, within acrA at 98.019 kb on + strand, within acrA at 98.027 kb on + strand, within acrA at 98.165 kb on + strand, within acrA at 98.166 kb on - strand, within acrA at 98.195 kb on - strand, within acrA at 98.247 kb on + strand, within acrA at 98.366 kb on + strand, within acrA at 98.367 kb on - strand, within acrA at 98.384 kb on + strand, within acrA at 98.430 kb on - strand, within acrA at 98.430 kb on - strand, within acrA at 98.444 kb on + strand, within acrA at 98.513 kb on + strand, within acrA at 98.689 kb on + strand at 98.690 kb on - strand at 98.692 kb on + strand at 98.692 kb on + strand at 98.692 kb on + strand at 98.692 kb on + strand at 98.693 kb on - strand at 98.753 kb on + strand at 98.756 kb on + strand at 98.802 kb on + strand at 98.803 kb on - strand at 98.930 kb on - strand at 99.055 kb on + strand at 99.055 kb on + strand at 99.055 kb on + strand at 99.055 kb on + strand at 99.055 kb on + strand at 99.056 kb on - strand at 99.056 kb on - strand at 99.056 kb on - strand at 99.056 kb on - strand at 99.253 kb on - strand, within acrB at 99.295 kb on + strand, within acrB at 99.309 kb on + strand, within acrB at 99.381 kb on + strand, within acrB at 99.528 kb on + strand, within acrB at 99.529 kb on - strand, within acrB at 99.650 kb on - strand, within acrB at 99.835 kb on - strand, within acrB at 99.849 kb on + strand, within acrB at 99.888 kb on + strand, within acrB at 99.888 kb on + strand, within acrB at 99.892 kb on + strand, within acrB at 99.892 kb on + strand, within acrB at 99.892 kb on + strand, within acrB at 99.892 kb on + strand, within acrB at 99.893 kb on - strand, within acrB at 99.893 kb on - strand, within acrB at 100.122 kb on + strand, within acrB at 100.123 kb on - strand, within acrB at 100.213 kb on - strand, within acrB at 100.221 kb on + strand, within acrB at 100.221 kb on + strand, within acrB at 100.222 kb on - strand, within acrB at 100.222 kb on - strand, within acrB at 100.225 kb on + strand, within acrB at 100.243 kb on - strand, within acrB at 100.243 kb on - strand, within acrB at 100.350 kb on + strand, within acrB at 100.405 kb on + strand, within acrB at 100.405 kb on + strand, within acrB at 100.419 kb on - strand, within acrB at 100.459 kb on + strand, within acrB at 100.460 kb on - strand, within acrB at 100.487 kb on - strand, within acrB at 100.543 kb on - strand, within acrB at 100.585 kb on - strand, within acrB at 100.615 kb on + strand, within acrB at 100.615 kb on + strand, within acrB at 100.616 kb on - strand, within acrB at 100.767 kb on + strand, within acrB at 100.959 kb on + strand, within acrB at 100.973 kb on + strand, within acrB at 101.053 kb on - strand, within acrB at 101.065 kb on - strand, within acrB at 101.098 kb on + strand, within acrB at 101.098 kb on + strand, within acrB at 101.141 kb on - strand, within acrB at 101.161 kb on + strand, within acrB at 101.194 kb on + strand, within acrB at 101.195 kb on - strand, within acrB at 101.195 kb on - strand, within acrB at 101.328 kb on + strand, within acrB at 101.334 kb on + strand, within acrB at 101.395 kb on + strand, within acrB at 101.395 kb on + strand, within acrB at 101.396 kb on - strand, within acrB at 101.456 kb on - strand, within acrB at 101.500 kb on + strand, within acrB at 101.612 kb on + strand, within acrB at 101.659 kb on - strand, within acrB at 101.978 kb on - strand at 102.023 kb on + strand at 102.029 kb on - strand at 102.029 kb on - strand at 102.087 kb on - strand at 102.097 kb on - strand at 102.123 kb on - strand at 102.127 kb on - strand at 102.133 kb on + strand at 102.137 kb on - strand at 102.141 kb on - strand at 102.226 kb on - strand at 102.250 kb on + strand at 102.254 kb on - strand at 102.254 kb on - strand at 102.338 kb on + strand at 102.339 kb on - strand at 102.422 kb on + strand at 102.424 kb on + strand at 102.424 kb on + strand at 102.428 kb on + strand at 102.428 kb on + strand at 102.429 kb on - strand at 102.429 kb on - strand at 102.433 kb on + strand at 102.531 kb on - strand at 102.701 kb on - strand, within tomB at 102.704 kb on + strand, within tomB at 102.717 kb on - strand, within tomB at 102.719 kb on - strand, within tomB at 102.772 kb on + strand, within tomB at 102.788 kb on + strand, within tomB at 102.788 kb on + strand, within tomB at 102.789 kb on - strand, within tomB at 102.794 kb on - strand, within tomB at 102.796 kb on + strand, within tomB at 102.797 kb on - strand, within tomB at 102.833 kb on - strand, within tomB at 102.914 kb on + strand at 102.920 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 97,912 - acrA HEPCGN_06815 0.25 +3.6 97,923 + acrA HEPCGN_06815 0.26 +1.0 98,013 - acrA HEPCGN_06815 0.34 -0.3 98,019 + acrA HEPCGN_06815 0.34 -0.0 98,019 + acrA HEPCGN_06815 0.34 -0.7 98,027 + acrA HEPCGN_06815 0.35 +0.3 98,165 + acrA HEPCGN_06815 0.46 -0.0 98,166 - acrA HEPCGN_06815 0.46 +1.1 98,195 - acrA HEPCGN_06815 0.49 -0.9 98,247 + acrA HEPCGN_06815 0.53 +2.9 98,366 + acrA HEPCGN_06815 0.63 +0.7 98,367 - acrA HEPCGN_06815 0.63 +2.7 98,384 + acrA HEPCGN_06815 0.65 +1.7 98,430 - acrA HEPCGN_06815 0.69 +0.2 98,430 - acrA HEPCGN_06815 0.69 +1.3 98,444 + acrA HEPCGN_06815 0.70 +1.2 98,513 + acrA HEPCGN_06815 0.76 +2.0 98,689 + -0.8 98,690 - +3.5 98,692 + +0.2 98,692 + +1.6 98,692 + +0.1 98,692 + -0.4 98,693 - +0.6 98,753 + -0.2 98,756 + +0.3 98,802 + +0.7 98,803 - +1.2 98,930 - +0.8 99,055 + +1.0 99,055 + +0.8 99,055 + +0.6 99,055 + -0.3 99,055 + -1.7 99,056 - -0.7 99,056 - +0.7 99,056 - -0.0 99,056 - +0.4 99,253 - acrB HEPCGN_06820 0.14 +0.3 99,295 + acrB HEPCGN_06820 0.15 +1.2 99,309 + acrB HEPCGN_06820 0.15 +1.3 99,381 + acrB HEPCGN_06820 0.18 +0.8 99,528 + acrB HEPCGN_06820 0.22 +0.1 99,529 - acrB HEPCGN_06820 0.22 -0.9 99,650 - acrB HEPCGN_06820 0.26 +0.0 99,835 - acrB HEPCGN_06820 0.32 -0.2 99,849 + acrB HEPCGN_06820 0.32 +1.3 99,888 + acrB HEPCGN_06820 0.34 +2.5 99,888 + acrB HEPCGN_06820 0.34 +0.4 99,892 + acrB HEPCGN_06820 0.34 +0.3 99,892 + acrB HEPCGN_06820 0.34 +1.8 99,892 + acrB HEPCGN_06820 0.34 +1.8 99,892 + acrB HEPCGN_06820 0.34 +0.5 99,893 - acrB HEPCGN_06820 0.34 +0.9 99,893 - acrB HEPCGN_06820 0.34 +0.5 100,122 + acrB HEPCGN_06820 0.41 +2.0 100,123 - acrB HEPCGN_06820 0.41 -0.8 100,213 - acrB HEPCGN_06820 0.44 +0.2 100,221 + acrB HEPCGN_06820 0.44 +0.9 100,221 + acrB HEPCGN_06820 0.44 +2.3 100,222 - acrB HEPCGN_06820 0.44 -0.1 100,222 - acrB HEPCGN_06820 0.44 -0.1 100,225 + acrB HEPCGN_06820 0.44 +1.6 100,243 - acrB HEPCGN_06820 0.45 -0.5 100,243 - acrB HEPCGN_06820 0.45 +0.8 100,350 + acrB HEPCGN_06820 0.48 +0.9 100,405 + acrB HEPCGN_06820 0.50 +1.6 100,405 + acrB HEPCGN_06820 0.50 +1.5 100,419 - acrB HEPCGN_06820 0.51 +0.9 100,459 + acrB HEPCGN_06820 0.52 -0.7 100,460 - acrB HEPCGN_06820 0.52 +0.5 100,487 - acrB HEPCGN_06820 0.53 +1.4 100,543 - acrB HEPCGN_06820 0.54 +0.7 100,585 - acrB HEPCGN_06820 0.56 +0.6 100,615 + acrB HEPCGN_06820 0.57 +1.5 100,615 + acrB HEPCGN_06820 0.57 +2.8 100,616 - acrB HEPCGN_06820 0.57 +1.7 100,767 + acrB HEPCGN_06820 0.62 +0.4 100,959 + acrB HEPCGN_06820 0.68 -0.5 100,973 + acrB HEPCGN_06820 0.68 -0.8 101,053 - acrB HEPCGN_06820 0.71 -0.8 101,065 - acrB HEPCGN_06820 0.71 +0.5 101,098 + acrB HEPCGN_06820 0.72 -0.0 101,098 + acrB HEPCGN_06820 0.72 -0.7 101,141 - acrB HEPCGN_06820 0.73 +0.2 101,161 + acrB HEPCGN_06820 0.74 +0.5 101,194 + acrB HEPCGN_06820 0.75 +1.6 101,195 - acrB HEPCGN_06820 0.75 +1.4 101,195 - acrB HEPCGN_06820 0.75 -0.1 101,328 + acrB HEPCGN_06820 0.79 +0.5 101,334 + acrB HEPCGN_06820 0.80 +1.0 101,395 + acrB HEPCGN_06820 0.82 +0.6 101,395 + acrB HEPCGN_06820 0.82 -0.2 101,396 - acrB HEPCGN_06820 0.82 +0.6 101,456 - acrB HEPCGN_06820 0.83 +0.6 101,500 + acrB HEPCGN_06820 0.85 +0.2 101,612 + acrB HEPCGN_06820 0.88 -0.1 101,659 - acrB HEPCGN_06820 0.90 +1.1 101,978 - +0.2 102,023 + -0.4 102,029 - +1.3 102,029 - -1.7 102,087 - -0.5 102,097 - -1.2 102,123 - +0.6 102,127 - -1.5 102,133 + -0.5 102,137 - -1.1 102,141 - +1.0 102,226 - +0.9 102,250 + +0.7 102,254 - +1.6 102,254 - +2.5 102,338 + -0.5 102,339 - +1.8 102,422 + +0.4 102,424 + +0.8 102,424 + +0.0 102,428 + -1.4 102,428 + -0.3 102,429 - -1.4 102,429 - -0.4 102,433 + -0.6 102,531 - +1.0 102,701 - tomB HEPCGN_06825 0.48 +0.0 102,704 + tomB HEPCGN_06825 0.49 -0.7 102,717 - tomB HEPCGN_06825 0.52 -2.2 102,719 - tomB HEPCGN_06825 0.53 +0.8 102,772 + tomB HEPCGN_06825 0.67 -0.2 102,788 + tomB HEPCGN_06825 0.71 +0.3 102,788 + tomB HEPCGN_06825 0.71 -0.7 102,789 - tomB HEPCGN_06825 0.71 +1.0 102,794 - tomB HEPCGN_06825 0.73 +0.9 102,796 + tomB HEPCGN_06825 0.73 +0.1 102,797 - tomB HEPCGN_06825 0.74 -0.6 102,833 - tomB HEPCGN_06825 0.83 +1.2 102,914 + +0.3 102,920 + -0.3
Or see this region's nucleotide sequence