Experiment: Bas21
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mscK and acrR are separated by 127 nucleotides acrR and acrA are separated by 141 nucleotides acrA and acrB are separated by 22 nucleotides
HEPCGN_06805: mscK - mechanosensitive channel MscK, at 93,332 to 96,694
mscK
HEPCGN_06810: acrR - multidrug efflux transporter transcriptional repressor AcrR, at 96,822 to 97,469
acrR
HEPCGN_06815: acrA - multidrug efflux RND transporter periplasmic adaptor subunit AcrA, at 97,611 to 98,804
acrA
HEPCGN_06820: acrB - efflux RND transporter permease AcrB, at 98,827 to 101,976
acrB
Position (kb) 97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 96.675 kb on + strand at 96.675 kb on + strand at 96.688 kb on + strand at 96.688 kb on + strand at 96.688 kb on + strand at 96.688 kb on + strand at 96.688 kb on + strand at 96.688 kb on + strand at 96.688 kb on + strand at 96.689 kb on - strand at 96.689 kb on - strand at 96.689 kb on - strand at 96.752 kb on - strand at 96.774 kb on + strand at 96.865 kb on + strand at 96.865 kb on + strand at 96.959 kb on + strand, within acrR at 96.971 kb on + strand, within acrR at 96.974 kb on + strand, within acrR at 96.997 kb on - strand, within acrR at 97.026 kb on - strand, within acrR at 97.076 kb on + strand, within acrR at 97.132 kb on - strand, within acrR at 97.133 kb on + strand, within acrR at 97.133 kb on + strand, within acrR at 97.134 kb on - strand, within acrR at 97.134 kb on - strand, within acrR at 97.146 kb on + strand, within acrR at 97.191 kb on + strand, within acrR at 97.203 kb on + strand, within acrR at 97.204 kb on - strand, within acrR at 97.204 kb on - strand, within acrR at 97.204 kb on - strand, within acrR at 97.241 kb on - strand, within acrR at 97.251 kb on + strand, within acrR at 97.252 kb on - strand, within acrR at 97.325 kb on - strand, within acrR at 97.325 kb on - strand, within acrR at 97.383 kb on + strand, within acrR at 97.407 kb on + strand at 97.407 kb on + strand at 97.469 kb on + strand at 97.469 kb on + strand at 97.470 kb on - strand at 97.470 kb on - strand at 97.498 kb on + strand at 97.503 kb on - strand at 97.503 kb on - strand at 97.503 kb on - strand at 97.516 kb on + strand at 97.517 kb on - strand at 97.517 kb on - strand at 97.517 kb on - strand at 97.517 kb on - strand at 97.520 kb on + strand at 97.525 kb on + strand at 97.559 kb on + strand at 97.562 kb on + strand at 97.606 kb on + strand at 97.611 kb on - strand at 97.611 kb on - strand at 97.631 kb on + strand at 97.735 kb on + strand, within acrA at 97.735 kb on + strand, within acrA at 97.912 kb on - strand, within acrA at 97.923 kb on + strand, within acrA at 98.013 kb on - strand, within acrA at 98.019 kb on + strand, within acrA at 98.019 kb on + strand, within acrA at 98.027 kb on + strand, within acrA at 98.165 kb on + strand, within acrA at 98.166 kb on - strand, within acrA at 98.195 kb on - strand, within acrA at 98.247 kb on + strand, within acrA at 98.366 kb on + strand, within acrA at 98.367 kb on - strand, within acrA at 98.384 kb on + strand, within acrA at 98.430 kb on - strand, within acrA at 98.430 kb on - strand, within acrA at 98.444 kb on + strand, within acrA at 98.513 kb on + strand, within acrA at 98.689 kb on + strand at 98.690 kb on - strand at 98.692 kb on + strand at 98.692 kb on + strand at 98.692 kb on + strand at 98.692 kb on + strand at 98.693 kb on - strand at 98.753 kb on + strand at 98.756 kb on + strand at 98.802 kb on + strand at 98.803 kb on - strand at 98.930 kb on - strand at 99.055 kb on + strand at 99.055 kb on + strand at 99.055 kb on + strand at 99.055 kb on + strand at 99.055 kb on + strand at 99.056 kb on - strand at 99.056 kb on - strand at 99.056 kb on - strand at 99.056 kb on - strand at 99.253 kb on - strand, within acrB at 99.295 kb on + strand, within acrB at 99.309 kb on + strand, within acrB at 99.381 kb on + strand, within acrB at 99.528 kb on + strand, within acrB at 99.529 kb on - strand, within acrB at 99.650 kb on - strand, within acrB
Per-strain Table
Position Strand Gene LocusTag Fraction Bas21 remove 96,675 + -0.1 96,675 + -0.2 96,688 + +0.0 96,688 + +0.2 96,688 + +0.8 96,688 + +0.2 96,688 + +0.3 96,688 + +1.5 96,688 + -0.1 96,689 - -0.1 96,689 - -0.8 96,689 - -1.4 96,752 - +1.2 96,774 + -1.6 96,865 + -1.5 96,865 + -0.3 96,959 + acrR HEPCGN_06810 0.21 -1.7 96,971 + acrR HEPCGN_06810 0.23 +0.1 96,974 + acrR HEPCGN_06810 0.23 -0.9 96,997 - acrR HEPCGN_06810 0.27 -0.6 97,026 - acrR HEPCGN_06810 0.31 -2.0 97,076 + acrR HEPCGN_06810 0.39 -0.1 97,132 - acrR HEPCGN_06810 0.48 -2.5 97,133 + acrR HEPCGN_06810 0.48 -1.5 97,133 + acrR HEPCGN_06810 0.48 -0.5 97,134 - acrR HEPCGN_06810 0.48 -2.3 97,134 - acrR HEPCGN_06810 0.48 -0.2 97,146 + acrR HEPCGN_06810 0.50 +3.5 97,191 + acrR HEPCGN_06810 0.57 +0.4 97,203 + acrR HEPCGN_06810 0.59 -0.9 97,204 - acrR HEPCGN_06810 0.59 -1.1 97,204 - acrR HEPCGN_06810 0.59 +0.9 97,204 - acrR HEPCGN_06810 0.59 +0.7 97,241 - acrR HEPCGN_06810 0.65 +0.2 97,251 + acrR HEPCGN_06810 0.66 -1.4 97,252 - acrR HEPCGN_06810 0.66 +1.1 97,325 - acrR HEPCGN_06810 0.78 -1.8 97,325 - acrR HEPCGN_06810 0.78 -1.6 97,383 + acrR HEPCGN_06810 0.87 -0.0 97,407 + +1.4 97,407 + +0.5 97,469 + -0.5 97,469 + -0.3 97,470 - -2.0 97,470 - +1.5 97,498 + +1.4 97,503 - +0.6 97,503 - -0.7 97,503 - +1.4 97,516 + -2.3 97,517 - +1.6 97,517 - +0.9 97,517 - +3.0 97,517 - +1.4 97,520 + -0.6 97,525 + +2.0 97,559 + -2.2 97,562 + -0.7 97,606 + +0.3 97,611 - +1.1 97,611 - +1.0 97,631 + +0.7 97,735 + acrA HEPCGN_06815 0.10 +0.9 97,735 + acrA HEPCGN_06815 0.10 +1.5 97,912 - acrA HEPCGN_06815 0.25 +3.6 97,923 + acrA HEPCGN_06815 0.26 +1.0 98,013 - acrA HEPCGN_06815 0.34 -0.3 98,019 + acrA HEPCGN_06815 0.34 -0.0 98,019 + acrA HEPCGN_06815 0.34 -0.7 98,027 + acrA HEPCGN_06815 0.35 +0.3 98,165 + acrA HEPCGN_06815 0.46 -0.0 98,166 - acrA HEPCGN_06815 0.46 +1.1 98,195 - acrA HEPCGN_06815 0.49 -0.9 98,247 + acrA HEPCGN_06815 0.53 +2.9 98,366 + acrA HEPCGN_06815 0.63 +0.7 98,367 - acrA HEPCGN_06815 0.63 +2.7 98,384 + acrA HEPCGN_06815 0.65 +1.7 98,430 - acrA HEPCGN_06815 0.69 +0.2 98,430 - acrA HEPCGN_06815 0.69 +1.3 98,444 + acrA HEPCGN_06815 0.70 +1.2 98,513 + acrA HEPCGN_06815 0.76 +2.0 98,689 + -0.8 98,690 - +3.5 98,692 + +0.2 98,692 + +1.6 98,692 + +0.1 98,692 + -0.4 98,693 - +0.6 98,753 + -0.2 98,756 + +0.3 98,802 + +0.7 98,803 - +1.2 98,930 - +0.8 99,055 + +1.0 99,055 + +0.8 99,055 + +0.6 99,055 + -0.3 99,055 + -1.7 99,056 - -0.7 99,056 - +0.7 99,056 - -0.0 99,056 - +0.4 99,253 - acrB HEPCGN_06820 0.14 +0.3 99,295 + acrB HEPCGN_06820 0.15 +1.2 99,309 + acrB HEPCGN_06820 0.15 +1.3 99,381 + acrB HEPCGN_06820 0.18 +0.8 99,528 + acrB HEPCGN_06820 0.22 +0.1 99,529 - acrB HEPCGN_06820 0.22 -0.9 99,650 - acrB HEPCGN_06820 0.26 +0.0
Or see this region's nucleotide sequence