Strain Fitness in Escherichia coli ECOR38 around HEPCGN_06555

Experiment: Bas21

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntglxR and hyi are separated by 99 nucleotideshyi and gcl are separated by 12 nucleotides HEPCGN_06550: glxR - 2-hydroxy-3-oxopropionate reductase, at 27,334 to 28,212 glxR HEPCGN_06555: hyi - hydroxypyruvate isomerase, at 28,312 to 29,088 hyi HEPCGN_06560: gcl - glyoxylate carboligase, at 29,101 to 30,882 gcl Position (kb) 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 27.345 kb on + strandat 27.420 kb on + strandat 27.814 kb on - strand, within glxRat 27.975 kb on + strand, within glxRat 27.975 kb on + strand, within glxRat 28.018 kb on - strand, within glxRat 28.018 kb on - strand, within glxRat 28.281 kb on + strandat 28.282 kb on - strandat 28.818 kb on + strand, within hyiat 28.828 kb on + strand, within hyiat 28.936 kb on - strand, within hyiat 29.057 kb on - strandat 29.341 kb on + strand, within gclat 29.415 kb on - strand, within gclat 29.486 kb on + strand, within gclat 29.662 kb on - strand, within gclat 29.717 kb on + strand, within gclat 29.717 kb on + strand, within gclat 29.718 kb on - strand, within gclat 29.718 kb on - strand, within gclat 29.718 kb on - strand, within gclat 29.756 kb on + strand, within gclat 29.847 kb on + strand, within gclat 29.916 kb on + strand, within gclat 29.917 kb on - strand, within gclat 29.976 kb on + strand, within gcl

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas21
remove
27,345 + -0.4
27,420 + +1.2
27,814 - glxR HEPCGN_06550 0.55 +0.9
27,975 + glxR HEPCGN_06550 0.73 +4.5
27,975 + glxR HEPCGN_06550 0.73 +0.4
28,018 - glxR HEPCGN_06550 0.78 +1.4
28,018 - glxR HEPCGN_06550 0.78 +0.3
28,281 + -0.3
28,282 - -0.4
28,818 + hyi HEPCGN_06555 0.65 +1.7
28,828 + hyi HEPCGN_06555 0.66 -0.3
28,936 - hyi HEPCGN_06555 0.80 +0.7
29,057 - +1.7
29,341 + gcl HEPCGN_06560 0.13 +1.5
29,415 - gcl HEPCGN_06560 0.18 +1.2
29,486 + gcl HEPCGN_06560 0.22 -1.0
29,662 - gcl HEPCGN_06560 0.31 -0.1
29,717 + gcl HEPCGN_06560 0.35 -2.7
29,717 + gcl HEPCGN_06560 0.35 +0.2
29,718 - gcl HEPCGN_06560 0.35 -0.0
29,718 - gcl HEPCGN_06560 0.35 -2.1
29,718 - gcl HEPCGN_06560 0.35 +0.2
29,756 + gcl HEPCGN_06560 0.37 -0.4
29,847 + gcl HEPCGN_06560 0.42 -1.2
29,916 + gcl HEPCGN_06560 0.46 -1.0
29,917 - gcl HEPCGN_06560 0.46 -0.0
29,976 + gcl HEPCGN_06560 0.49 -0.7

Or see this region's nucleotide sequence